Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 seq3 89.7 1e-12 >seq1 Length=2076502 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 ||||| |||||||| |||| ||||| | |||||||| || ||||| || ||| ||||| Sbjct 1596782 TTCGCCGAACGTCTCGTTGCCTTTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCATTT 1596723 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 | ||||| ||| | || ||||| | | ||||| || |||| || || |||||| Sbjct 1596722 GCCTCCATCTTCTGGATGAAGAAACGCGGTCTCATGCCTGGCTTAACCTTCTCCAATGAG 1596663 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | |||||||| |||||||| | |||||||||||||| || Sbjct 1596662 CTCATTAGCCGTGATGAGGGCATGCATACCGATTTTGCATG 1596622 >seq3 Length=1723946 Score = 89.7 bits (98), Expect = 1e-12 Identities = 174/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 364890 CGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGT 364949 ||||| ||| || |||| |||| |||||||||| |||||||| || ||||| | Sbjct 705190 CGACCTCGGCCTTTGGGACGACAACATGAAGAACATGATCATCGCACACAACGGTTCCAT 705249 Query 364950 GCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAAT 365009 |||||||| || | || || | | ||| | || ||||| ||||| |||||||| Sbjct 705250 TCAGAACATCCCGACTATCCCTGACAACGTCAAGGCGATCTACAAGACCGTTTGGGAAAT 705309 Query 365010 TT-CCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCC 365068 ||| ||| |||| || | || || |||||||| || || ||||| || || | Sbjct 705310 CAGCCAGAAGAAGG-TCATCGACCTCGCTGCGGATCGCGGCGCGTTCATCTGCCAAAGTC 705368 Query 365069 AGTCGTTTAACGTATTCATGACTCAGCCAAC-CTCCGCCAAGCTTACATCCATGCATTTC 365127 || || ||| | | || ||| || ||| |||| ||| ||| |||||| ||| Sbjct 705369 AGAGCTTAAACATCCACCTGCAAGCGCCGACGCTCGGCCA-GCTGACAAGCATGCACTTC 705427 Query 365128 TACGGGTGGAAA 365139 |||||||||||| Sbjct 705428 TACGGGTGGAAA 705439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348490039292