Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 9e-16 seq5 89.7 4e-13 >seq18 Length=860724 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||| | |||||||| | || ||| ||||||||||| | Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| ||||| || ||| Sbjct 789393 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAA 789452 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | | || |||||||| ||||||| | | || ||| || || Sbjct 789453 CAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 789512 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || ||| ||||| Sbjct 789513 ATCCAGAAGGAGTCCACACTTCAT 789536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| || | || ||| ||||||||||| | Sbjct 789610 ATGCAGATCTTCGTCAAGACACTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCG 789669 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || ||||| ||| Sbjct 789670 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAA 789729 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || | || |||| || ||| ||||| |||||||| Sbjct 789730 CAACGTCTCATTTTCGCCGGAAAGCAGCTCGAAGA 789764 >seq5 Length=1591901 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || |||| || |||| || ||| | | Sbjct 947975 ATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATCACTCTCGAGGTTGAGTCATCC 947916 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| |||||| |||||||||||||| || ||||||||| Sbjct 947915 GATACCATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGATCAA 947856 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || |||||||| ||||| || | | | | | ||| ||||| Sbjct 947855 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCCGACTATAAT 947796 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || ||||| Sbjct 947795 ATTCAGAAGGAGTCGACTCTTCAT 947772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934396607430