Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5 113 3e-20 seq9 91.5 1e-13 >seq5 Length=1591901 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| |||||||| || || ||||||||||| ||||| |||| |||| |||| || Sbjct 947544 ATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTG 947603 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| || |||||||| ||||||| || | |||||||| ||| || || Sbjct 947604 CTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTT 947663 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||||| || | | ||| || || || || || || || || || ||||| Sbjct 947664 CGCTTTCACGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGT 947723 Query 38294 CAAGGTTTTCACGAATATCTGCATG 38318 ||| || || || || ||||||||| Sbjct 947724 CAACGTCTTGACAAAGATCTGCATG 947748 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||| | || | ||||||||| |||||| |||||||| || || || Sbjct 947749 CCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAA 947808 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | || || || || || || || ||||||||||||| ||| Sbjct 947809 AGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGA 947868 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| || ||| ||||| | | ||||| ||||| Sbjct 947869 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAACC 947928 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | |||||| ||||| ||||||||| Sbjct 947929 TCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCATG 947976 >seq9 Length=1263640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 178/262 (68%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| |||| || || ||||| || || ||||| || | |||||| | || |||| Sbjct 1103956 CCAAAATCGAAGGAAAAGGAAATGGCATCAAAACTGTGGTCCCGAACATGTCCGACGTCG 1104015 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | | ||| ||| | ||||| | || ||| | ||||| | || || || ||||| |||| Sbjct 1104016 CCAGGGCTCTCAGTCGCCCCCCAACGTACACCACGAAGTTCTTTGGTTGTGAACTCGGCG 1104075 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 ||||||| ||||| | || ||||| || | ||||| || || | || || || Sbjct 1104076 CTCAGACATCATTTGACGAGAAGAACGACCGATATATCGTGAATGGGGCACACAA---TG 1104132 Query 6412 CCAA---GCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAAT 6468 || | |||| ||| | ||||| | ||| || ||| ||||| || ||||| | Sbjct 1104133 CCGAACGTCTGCGGGAACTGCTTGATGTCTTCATCGACAAATTTGTCCTATGTCGATCGT 1104192 Query 6469 GCGATAACCCGGAGACCGAGCT 6490 || | ||||| || || ||||| Sbjct 1104193 GCAAGAACCCTGAAACTGAGCT 1104214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945950856286