Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 >seq1 Length=2076502 Score = 185 bits (204), Expect = 1e-41 Identities = 385/560 (69%), Gaps = 14/560 (3%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| |||||| ||||| || ||| || || || || | || || | |||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || ||||| || ||||| | || ||||| || | ||| ||||| || || || ||||| Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGC-G 32828 || || || || ||||| || || || ||||| | |||||| || || ||| || | | Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCA-AACGTCGACTG 1598677 Query 32829 CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 || ||| ||||||| | | |||||||||||||| || | |||| ||||| || Sbjct 1598676 CTTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTC 1598617 Query 32888 TATAGCATTAAAGA-GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 ||||| | ||| | || || || || | |||| | | ||| |||||||| | | Sbjct 1598616 AATAGCGTCAAACAGGAGAG-TTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA 1598558 Query 32947 GACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || | || | ||||| || | |||||| || ||||||| || |||||||| | Sbjct 1598557 -ACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGC 1598499 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065 ||||| | | ||| || || | |||| ||||| | | ||||| || || || || Sbjct 1598498 GCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCA 1598439 Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AG 33124 ||| ||| || ||||| |||| ||||| || |||||| ||||| | | ||| || Sbjct 1598438 TCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGT-TCGAGTTGAG 1598380 Query 33125 T---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 | || ||||| || ||| || | || | ||| | ||| || | |||||||| || Sbjct 1598379 TTTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGA 1598320 Query 33182 TGCCTCTGCCTTTTTATACA 33201 ||||| ||| | ||| |||| Sbjct 1598319 TGCCTGTGCTTGTTTGTACA 1598300 Score = 170 bits (188), Expect = 2e-37 Identities = 374/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 ||||| |||||| || | ||||| || | ||||| | || ||||| || || | Sbjct 1596622 CATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAG 1596681 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || || || || | ||| || ||||| ||||||||||| || ||||| Sbjct 1596682 CCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAG 1596741 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGT 32837 || ||||| || || |||||||||| || | || | || | | | |||| Sbjct 1596742 ATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGCA 1596801 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||| | ||||||| || |||||||| || | ||||| || ||||| | |||| Sbjct 1596802 ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCG 1596861 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || ||||| | || | ||| || | || || || || | || |||| | Sbjct 1596862 AACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTC 1596921 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || |||||||| || || || || || ||||| || | |||||||| | | Sbjct 1596922 TCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGACC 1596981 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || ||||| | |||| ||||| ||||| ||||| ||||| || || ||| ||| Sbjct 1596982 TGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCA 1597041 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 33133 || || || | || || || || | |||| || |||| | || ||||| Sbjct 1597042 AAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGT-TGTCGTTAAGGCGGTTGTTCCA 1597100 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | | ||| || || | |||| ||| ||| ||||||| || || || || ||||| Sbjct 1597101 GTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCTT 1597160 Query 33194 TTTATACATATTCCAGAT 33211 |||||||| | |||||| Sbjct 1597161 CTTATACATCTGCCAGAT 1597178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629576357600