Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18 125 6e-24 seq5 107 2e-18 >seq18 Length=860724 Score = 125 bits (138), Expect = 6e-24 Identities = 154/208 (74%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | || || || ||||||| ||||||| |||||||| Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | ||| ||||| || || || || ||||| Sbjct 789393 GACACCATCGACAACGTCA---AGGCCAAGATTCAG-GACAAGGAGGGCATCCCTCCTGA 789448 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || ||||| || || ||| | ||||||| ||||||| | ||| || Sbjct 789449 CCAACAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTA 789508 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 |||||| || || || ||||| || ||| Sbjct 789509 CAATATCCAGAAGGAGTCCACACTTCAT 789536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || | || || |||||||| Sbjct 789838 ATGCAGATTTTCGTGAAGACGCTTACTGGGAAGACTATTACCCTTGAGGTTGAGTCGTCG 789897 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| | ||||| | ||| |||||||| || ||||| || || Sbjct 789898 GACACTATCGACAACGTCA---AGGCAAAGATTCA-GGACAAAGAGGGCATTCCGCCCGA 789953 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||| ||||| || | || |||| |||||| | || || Sbjct 789954 CCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTCTATCTGACTA 790013 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 || ||||| || || ||||| || ||| Sbjct 790014 TAACATTCAGAAGGAGTCCACTCTCCAT 790041 >seq5 Length=1591901 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||||| || Sbjct 947747 ATGCAGATCTTTGTCAAGACGTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCATCC 947688 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| || ||| || |||||||||||||| || || || Sbjct 947687 GACACTATTGACAACGTGAAAGCGAAGATCCAGGATAAAGAAGGGATTCCTCCCGATCAG 947628 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||||||||| || || || ||||||| | || || || ||||||||| Sbjct 947627 CAACGCCTTATTTTTGCTGGAAAGCAGCTAGAAGACGGACGTACATTGTCAGATTACAAT 947568 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 || || ||||| ||| || ||| Sbjct 947567 ATCCAGAAAGAGAGCACCCTTCAT 947544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326383957390