Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 >seq1 Length=2076502 Score = 197 bits (218), Expect = 2e-45 Identities = 381/559 (68%), Gaps = 5/559 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| |||||||| | || || || || || | ||||||| ||| ||||| Sbjct 1596621 GCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAA 1596680 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || |||||||| | ||| || || || ||||| || || || || Sbjct 1596681 GCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAA 1596740 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG-GAATTACTGC 93269 |||||||| || || ||||| || || | ||||||||| ||| | | | | | || Sbjct 1596741 GATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGC 1596800 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| | | |||||| || || || ||||| || ||||| | || || | || | Sbjct 1596801 A-ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCAT 1596859 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 || || || || |||||| | | ||| ||||| || ||||| | || |||||| Sbjct 1596860 CGAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACG 1596919 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || || |||| || ||||| ||| ||||| || |||||||| | ||| || | || Sbjct 1596920 TCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGA 1596979 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| ||||| | ||||| | || | | ||| ||||||||||| |||||||| || | Sbjct 1596980 CCTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAG 1597039 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCC 93566 |||| || || | | || || || || ||| | || |||| | || | || Sbjct 1597040 CAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGTTGTCGTTAAGGCGGTTGTTCC 1597099 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | ||| ||||| || || || || | ||| || | ||||| ||||| ||||| || | Sbjct 1597100 AGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCT 1597159 Query 93627 TTTTGTACATATCCCATAT 93645 | || ||||| | ||| || Sbjct 1597160 TCTTATACATCTGCCAGAT 1597178 Score = 170 bits (188), Expect = 2e-37 Identities = 386/577 (67%), Gaps = 5/577 (1%) Strand=Plus/Minus Query 93073 GACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA 93132 || || | || ||| || ||||| ||||| || || | ||||| || || || | Sbjct 1598865 GAGATGAGTGAACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAG 1598806 Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 || || ||||| | || || | | || || ||||| | ||| ||||||||||| Sbjct 1598805 TTCGTTCGAAAATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGC 1598746 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 || || || ||||||||||||||||| || || || || |||| | ||| ||||| Sbjct 1598745 GAACGATCCTGAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAA 1598686 Query 93253 ATTTG-CGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 | | | | | ||||| ||||| | | ||||||||||| || ||| || ||| Sbjct 1598685 CGTCGACTGCTTGTCTGCT-ATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAG 1598627 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371 | | |||||| ||||||| ||| ||| | ||||||||||| ||||| || || |||| Sbjct 1598626 GAATTGTTTCAATAGCGTCAAACAGGAGAGTTCGCTCGTCCGGATCTCTGATATAGGTAT 1598567 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 | || | || || || | || || || || || || || |||| || || |||| Sbjct 1598566 CAATGAGCAACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGA 1598507 Query 93432 AACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGA 93491 | || | || || | | ||| || || | ||||| | || ||||| ||||| || | Sbjct 1598506 AGCAACGCGCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAA 1598447 Query 93492 CTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCAT 93551 | || ||||| || || || ||||| |||| | ||| || |||| | || | Sbjct 1598446 CGATGCCATCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCG 1598387 Query 93552 CTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 || || || | ||| || || || | || ||||| | ||| || |||||| Sbjct 1598386 AGTTGAGTTTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCC 1598327 Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 |||| ||||| | ||||| |||||||| | |||||| Sbjct 1598326 AAAAAGATGCCTGTGCTTGTTTGTACAGCTGCCATAT 1598290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858670007440