Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 122 7e-23 seq18 98.7 8e-16 >seq5 Length=1591901 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || ||| ||||||| || || || | || Sbjct 947975 ATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATCACTCTCGAGGTTGAGTCATCC 947916 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || ||||| ||||| || || ||||| ||||||||| Sbjct 947915 GATACCATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGATCAA 947856 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||| | ||||| ||| || | ||||| || || Sbjct 947855 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCCGACTATAAT 947796 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | ||| | || | || |||||||||| Sbjct 947795 ATTCAGAAGGAGTCGACTCTTCATCTCGTCCTTCGTCTGCGCGGAGG 947749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || || || || ||||||||||| || || ||||| ||| | ||||| |||||| Sbjct 948098 ATCCCTCCTGACCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACA 948039 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 | || |||||||||||||| ||||| || ||| | ||| | ||| | || |||||||| Sbjct 948038 CTTTCTGATTACAACATTCAGAAAGAGTCTACCCTCCATCTCGTTCTTCGTCTGCGCGGA 947979 Query 22444 GG 22445 || Sbjct 947978 GG 947977 >seq18 Length=860724 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | || || || || |||| || ||||| || | | Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || || || ||| Sbjct 789393 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAA 789452 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || || || | || ||| ||||| ||||||| ||||| Sbjct 789453 CAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 789512 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 789513 ATCCAGAAGGAGTCCAC 789529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || ||||| || | | Sbjct 789610 ATGCAGATCTTCGTCAAGACACTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCG 789669 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || ||||| ||| Sbjct 789670 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAA 789729 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || ||| | || || || || |||| || |||||| Sbjct 789730 CAACGTCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGGCGGACACTCTCAGACTACAAC 789789 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 789790 ATCCAGAAGGAGTCAACC 789807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726434676890