Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11 109 1e-18 seq1 98.7 2e-15 >seq11 Length=1246474 Score = 109 bits (120), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||||||| | || ||||| ||||| |||| |||| | || || | || Sbjct 551350 TTGGCCCCAATGGTTCCGGGAAGTCGACCCTGGTCAAGCTCCTCATCGGTGACATGGAGC 551409 Query 280237 CCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 ||| |||| || | |||||||| || ||| || || | |||||| ||||||| Sbjct 551410 CCAACAAGGGTGGTGAGACCTGGAAGCACCCTAACTTGGTTATTGGTTACGTAGCTCAGC 551469 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||| ||||||||||| || |||||||| |||| |||||| | | ||||| | ||||| Sbjct 551470 ACGCCTTCCACCACATTGACAACCACCTCGACAAGACTCCCCTCGAGTACATGCTGTGGC 551529 Query 280354 GCTATGCAAGTGGGCAGGATCTGGAG 280379 | ||| | || ||||||||||| Sbjct 551530 GTTATCAGACCGGTGAGGATCTGGAG 551555 >seq1 Length=2076502 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| ||| |||| |||||||| | |||||||||||||| || ||||| Sbjct 1596298 TCGAAGAAGTTAGTCTTCCCCTGGAGAGAGATCATGTCCATGAAGTCGAACGGATTTGTT 1596357 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||||| ||| || || ||||| || | || ||||| || || ||||| | | Sbjct 1596358 TTGTTGTAGACCTTCTCATTCCCCAGTGCGACTAGGAGACGGTCGGCAACGAACTCAATA 1596417 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| | ||||| |||| ||||||||||| Sbjct 1596418 TACTGGCACATCAAGTCAGCATTCATGCCAAT 1596449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832770237346