Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18 215 9e-51 seq30 188 1e-42 seq5 158 2e-33 seq1 95.1 2e-14 seq33 86.0 1e-11 seq15 84.2 4e-11 seq12 84.2 4e-11 seq8 84.2 4e-11 seq4 84.2 4e-11 seq3 84.2 4e-11 >seq18 Length=860724 Score = 215 bits (238), Expect = 9e-51 Identities = 184/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || |||||||| || || ||| Sbjct 789836 CCACCACGAAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAG 789777 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||||| ||| ||||| | |||||| |||||||| ||||| | |||||||||||| || Sbjct 789776 AGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGG 789717 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||||||| ||||||||||| | ||| || ||| Sbjct 789716 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACT 789657 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||| ||||||||||| |||||||| Sbjct 789656 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Score = 178 bits (196), Expect = 2e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || ||||| || || |||||||| || | |||||||| | ||| Sbjct 789535 TGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGC 789476 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | ||||||||| || || ||||| |||||||| |||||||| Sbjct 789475 TTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTG 789416 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||||||| ||||||||||| | || || ||||| | ||||||||| ||||| ||| Sbjct 789415 GCCTTGACGTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCTTTCCAGTG 789356 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| |||||||| ||||| Sbjct 789355 AGTGTCTTAACGAATATTTGCAT 789333 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 68251 ATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 ||||| || || || |||||||| || || |||||||| || || || || | |||||| Sbjct 790049 ATACCGAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCC 789990 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || | |||||| || || || || || | || |||||||| |||||||| || ||||| Sbjct 789989 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCC 789930 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 |||||||||||||||||| ||||| ||||| | || || || || | ||| || || Sbjct 789929 TGAATCTTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTC 789870 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || ||||| ||||| |||||||| Sbjct 789869 TTCCCAGTAAGCGTCTTCACGAAAATCTGCAT 789838 Score = 132 bits (146), Expect = 9e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 ||||||| || ||| ||| || || ||||| || || ||||| |||| ||| || || | Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| || | | || ||||| || || |||||||||||||| || | Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||||||| || || || || | || || || || | ||| || || || | Sbjct 790202 TCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCC 790143 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || |||||||| || ||||| Sbjct 790142 CAGTGAGCGTTTTGACGAAAATTTGCAT 790115 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| ||||||||| ||||| ||||| | || || || || Sbjct 789155 CCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATTGTGTCAGAGGACTCAACCTCA 789096 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || | ||||| ||||| |||||||| Sbjct 789095 AGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 789052 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | ||| | || | ||| ||||| ||||| || || || || ||||| || Sbjct 789331 CCACCGCGCAAGCGAAGCACGAGGTGAAGCGTAGACTCCTTCTGAATATTGTAATCAGAT 789272 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || ||||| | ||| || || ||||| || |||| |||||||||||| || Sbjct 789271 AGTGTGCGTCCGTCTTCAAGCTGTTTGCCAGCGAAGATCAGTCGTTGTTGGTCGGGAGGG 789212 Query 68355 ATGC 68358 |||| Sbjct 789211 ATGC 789208 >seq30 Length=600136 Score = 188 bits (208), Expect = 1e-42 Identities = 352/512 (69%), Gaps = 4/512 (1%) Strand=Plus/Plus Query 268284 CATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGA 268343 |||| |||||||| |||| || || ||||| || ||| | | ||| |||||| |||| Sbjct 336599 CATGTCCCCAATCACGCTGCGCATCGATGTTTCCTAGGTATAAGCACGACTGCTTTCCGA 336658 Query 268344 GCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAG 268403 || | ||| | || | ||| || || || ||||| ||| ||| || | | Sbjct 336659 GCGAGATATCCGCAGCTGCACGCGAGATCTTGCGCGTGACGAAGGTCCTGCCTCGACGCG 336718 Query 268404 GGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGT 268463 |||||||||||||||||||||||||||| || || |||||||| || | ||| || |||| Sbjct 336719 GGCTCTCGTGGTTGAAGAGGATGCCGTTACAGGCAAACATGCCGTACGACTCGCGATAGT 336778 Query 268464 TCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGG 268523 | ||||| ||||||| || | | ||||| | ||||| || || || | || | Sbjct 336779 TGACGACGATCCAGTACGCGTAGAGTTTTGCGCAGCCATACGGCGAGCGCGGGTAAAACG 336838 Query 268524 GCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTT 268583 | ||||| |||| || | ||| ||| ||||| | || ||||| ||||| || | Sbjct 336839 GGGTCGTCTCACTTTGCGGCGTCTCTACGACCTTGCCGTACAGTTCGGACGTCGAGGCCT 336898 Query 268584 GGTAGAA-CTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGA 268642 | ||||| | || || || || |||||| | || | || |||||||| || || Sbjct 336899 GATAGAATCGCACGTG-CTTCTCAAGCCCGCAGGTGCGCACGGCGTCGAGCAAGCGCAGG 336957 Query 268643 GTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGG 268702 || || | || || ||||| | || || || | ||||||||| || |||| ||| || Sbjct 336958 GTACCGAGCCCGTCAACGTCGCCGGTGTATTCGGCCATCTCGAAGGAGACCTTGACGTGT 337017 Query 268703 CTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC-ACGATCTTCACGAG 268761 ||| || || || || || | ||| || | ||| || ||| | ||| | ||||| Sbjct 337018 GACTGTGCACCGAGATTGTAGATCTCGGTTGGCTGGACTTG-TGCGATGATGTAGACGAG 337076 Query 268762 GTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 ||| || ||| | || ||||||||||||| Sbjct 337077 GTTTGTGCTATCGCTTAGATCTCCGTAGTGCA 337108 >seq5 Length=1591901 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || || | || | || || || ||||| || || || ||||| ||||| Sbjct 947749 CCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAA 947808 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| ||||| | |||||| ||||| ||| Sbjct 947809 AGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGA 947868 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| |||||||| |||||||| || ||||| || | ||| || || Sbjct 947869 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAACC 947928 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || ||||| |||||||| |||||||| Sbjct 947929 TCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Score = 96.9 bits (106), Expect = 6e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| |||||||||||||| |||||||| |||||||| || | || || || || Sbjct 948154 CCTTCTTTGTCTTGAATCTTGGCCTTGACATTATCGATGGTATCCGAGGACTCAACCTCG 948213 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||||||| ||||| ||||| ||||| ||||| ||||||||| || Sbjct 948214 AGCGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATTGTG 948261 >seq1 Length=2076502 Score = 95.1 bits (104), Expect = 2e-14 Identities = 349/537 (65%), Gaps = 15/537 (3%) Strand=Plus/Plus Query 10259 GCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTT 10318 |||||| || ||||| |||| ||| ||||| || | || |||||||| || || || Sbjct 1596642 GCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTT 1596701 Query 10319 GCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCACACCCA 10378 || |||||| |||| | || || || ||||| | | ||| || || | | Sbjct 1596702 CTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAA 1596761 Query 10379 GGCGACGAGGCGCTCTGCGAAGGA-GCG-GTCGCGC-GAAAAGTATTTCGAG-GCCCACG 10434 ||| ||||| || || ||||| | | | |||| | | || | | ||| ||||| Sbjct 1596762 GGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGCAATCCACCT-GAGAGCCCATT 1596820 Query 10435 CTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAGCTTGTTACGCTCGG 10494 | |||||||| | | |||||| ||||| | || ||||| || | | ||||||| Sbjct 1596821 CCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGG 1596880 Query 10495 TCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTC-A 10553 | |||| || || || | ||| ||||| || |||| ||||| | | || | Sbjct 1596881 CAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCA 1596940 Query 10554 TTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAG 10613 | || | ||| | | ||||| || ||| || | || ||||| | || |||| Sbjct 1596941 TCATAATC-TGGAACCCATAGAAACACCGAGCCTCGGCGACCTGAACTTCGTTGGAAAAG 1596999 Query 10614 TTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGC 10673 | | || ||||| | || || |||||| | | ||||||||| |||||| ||| Sbjct 1597000 CGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGA 1597059 Query 10674 TTGATGAAGTGGCGCTCATCATCGTT----CAGTTTTTCACGCCAGTCTACCACATCCTG 10729 ||||||||||||||| | ||||| | ||| || |||||| | ||||| Sbjct 1597060 GAGATGAAGTGGCGCTCGTTGTCGTTAAGGCGGTTGTT----CCAGTCGTGAAGATCCTT 1597115 Query 10730 GTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||| | | |||||| | |||||||| | || | |||||||| |||||||| Sbjct 1597116 CGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCTTCTTATACATCTG 1597172 >seq33 Length=576204 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||| || |||||||| || ||||||||||| | ||||| || | ||| Sbjct 136130 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCAACCATCCTCAAGCTG 136189 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| | |||||| || |||| ||||||||| Sbjct 136190 CTTTCTGGCGAAGATCAGTCGTTGTTGGTC 136219 >seq15 Length=1191322 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || ||||| || || || ||| ||||||||||| | || || || || Sbjct 976164 CCTTCCTTATCCTGAATTTTGGCTTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCG 976105 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| || || || |||||||||||||||||||| || ||||| Sbjct 976104 AGGGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATTTGCAT 976061 >seq12 Length=1283914 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| ||||| |||||||||||||| | | | ||||||||| | || || |||||| Sbjct 1091897 CCTTCTTTGTCCTGAATCTTTGCCTTCATGTTGTTGATGGTGTCGGAAGACTCAACTTCC 1091838 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| || || || || |||||||| ||||| || ||||| Sbjct 1091837 AAATTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 1091794 >seq8 Length=1449076 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||| |||||||| ||||||||||||| || || ||||| Sbjct 782658 CCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCTGAAGACTCAACTTCA 782717 Query 68418 AAGGTGATGGTTTTTCCCGTGAGG 68441 | ||||||||||| ||||||||| Sbjct 782718 AGAGTGATGGTTTTGCCCGTGAGG 782741 >seq4 Length=1617472 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| ||||| |||||||||||||| ||| |||||| |||| | || || |||||| Sbjct 70459 CCTTCTTTGTCCTGAATCTTTGCCTTCACGTTGTCGATGATGTCAGAAGACTCAACTTCC 70400 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| || || | || |||||||| ||||| || ||||| Sbjct 70399 AAATTGATCGTCTTGCTGGTAAGGGTCTTCACGAAGATTTGCAT 70356 >seq3 Length=1723946 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| ||||| |||||||||||||| | | | ||||||||| | || || |||||| Sbjct 259616 CCTTCTTTGTCCTGAATCTTTGCCTTCATGTTGTTGATGGTGTCGGAAGACTCAACTTCC 259675 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| || || || || |||||||| ||||| || ||||| Sbjct 259676 AAATTGATCGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 259719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618874794320