Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5 102 7e-17 seq18 89.7 4e-13 >seq5 Length=1591901 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||| || || ||| | |||||| || || || || || ||| Sbjct 947779 GTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCA 947838 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| ||||| || || ||||||||||||||||| |||||| || Sbjct 947839 GCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGCCTTG 947898 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| |||| || || || || | || | ||| || || || || ||| Sbjct 947899 ACATTATCAATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTCCCAGTAAGGGTT 947958 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 947959 TTGACGAAGATCTGCATGCCT 947979 >seq18 Length=860724 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||||| || || | ||| || ||| ||||| || || ||| Sbjct 790034 GTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCA 789975 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| || |||||||| |||||||| ||||||| || Sbjct 789974 GCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTG 789915 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || || || || | ||| | || || || || || || Sbjct 789914 ACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCGTC 789855 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 789854 TTCACGAAAATCTGCAT 789838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132833161272