Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 219 8e-52 >seq1 Length=2076502 Score = 219 bits (242), Expect = 8e-52 Identities = 327/458 (71%), Gaps = 11/458 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| || ||||| || || |||||||||||||| || | | || Sbjct 1597052 CTCGCCTTCTTTGCTGCCTCCGATGGGATAGTCAATGAGAATTTGCTCGAACGCTTTTCC 1596993 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || ||| | ||||| || || ||||| || |||||||| || || ||| Sbjct 1596992 AACGAAGTTCAGGTCGCCGAGGCTCGGTGTTTCTATGGGTTCCAGATTATGATGGAAAAC 1596933 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||| || || || |||| |||||| |||| | | |||||| Sbjct 1596932 ATCCACTCCGAGACGTATTCCCTCCTCATCGACACTTACATCAAGGATGCTGCCGAGCGG 1596873 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | |||||| | ||| | ||||| || || |||||||||||||||||||| ||||| Sbjct 1596872 GAGTATCTGTTCGATGCCGTTGAGACCATCCCTTGCATCAAGAAGAAGGCGGAATGGGCT 1596813 Query 42663 CTCAACTGGATCG-AGAGTCCCG--ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 |||| ||||| | || ||| || | || |||| ||| | || || |||||| || Sbjct 1596812 CTCAGGTGGATTGCTGA---CCGACACTCGACTTTCGCCGAACGTCTCGTTGCCTTTGCC 1596756 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 || || || || ||||||||||| || | || ||||||||||||||| | ||| | | | Sbjct 1596755 GCTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGAAG-AAACG 1596697 Query 42780 GTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 ||| ||||| || | |||||||| || || ||||| ||| | || ||||| |||| Sbjct 1596696 CGGTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAGGGCATGCA 1596637 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 || || ||||| |||||||||||| ||||| |||| Sbjct 1596636 TACCGATTTTGCATGCCTCCTGTTC---AGCCATCTCA 1596602 Score = 168 bits (186), Expect = 1e-36 Identities = 309/446 (69%), Gaps = 10/446 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||| ||||| |||||||| ||||| || || || ||||| | |||| Sbjct 1598416 CTGGCCTTTTTCGCTGCCTCTGATGGCATCGTTAACGAAAACCTCGTTGAACGGTTTTCC 1598475 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| ||||||||| |||||||| || || || | ||||| ||| Sbjct 1598476 AACGAGGTTCAGGTGGCTGAGGCGCGTTGCTTCTATGGTTTTCAAACCATGATAGAAAAC 1598535 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 || ||||| ||| ||| | |||||| | || || ||| ||||| | |||| Sbjct 1598536 GTACACTCGGAGACCTACTCGT---TGCTCATTGATACCTATATCAGAGATCCGGACGAG 1598592 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || | ||||| | || || || || || || | ||||||| ||||| || ||| Sbjct 1598593 CGAACTCTCCTGTTTGACGCTATTGAAACAATTCCTTCCATCAAGCGCAAGGCCGATTGG 1598652 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||||||| ||||| | || | | | | ||||| | || || || || ||||| | Sbjct 1598653 GCGCTCAGGTGGATAGC-AGACAAGCAGTCGACGTTTGCGGAAAGACTTGTCGCCTTCGC 1598711 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 || || || || || || ||||| || | ||||| || || |||||| | ||| || Sbjct 1598712 TGCTGTGGAAGGTATATTTTTCTCAGGATCGTTCGCTTCAATATTCTGGATGAAGAAGCG 1598771 Query 42779 -GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| || ||||| || ||||| || |||||||||||||||||| |||| || ||||| | Sbjct 1598772 CGGTTTC-ATGCCTGGCCTCACATTTTCGAACGAACTCATCAGCCGGGATGAAGGGCTTC 1598830 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTC 42863 | | |||||| || || | |||||| Sbjct 1598831 ACACGGACTTCGCGTGTTTGCTGTTC 1598856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335587902560