Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 150 4e-31 seq18 134 3e-26 seq15 89.7 1e-12 seq1 86.0 1e-11 >seq5 Length=1591901 Score = 150 bits (166), Expect = 4e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| ||||| ||||| |||||||| || || | | || ||||||||||||| Sbjct 947540 CGAGATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTA 947599 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || ||||| || || || || || || ||| || || |||||||||||||||| Sbjct 947600 GCTGCTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGA 947659 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | |||||||||||||| || |||| ||| || || || || | |||||| ||||| | Sbjct 947660 TCTTCGCTTTCACGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGC 947719 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||| |||||||| || |||||||| Sbjct 947720 CCGTCAACGTCTTGACAAAGATCTGCAT 947747 Score = 150 bits (166), Expect = 4e-31 Identities = 176/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| |||||||||| || || || || |||||||||| Sbjct 947745 CATG-CCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGT 947803 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || ||||| || | || || || |||||||| ||||| ||||| || Sbjct 947804 CGGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTG---AT 947860 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || |||||||| ||||| || ||||| || || || || || | |||| | Sbjct 947861 CGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATG 947920 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| |||||||||||||| || || || |||||||| |||||||| Sbjct 947921 ACTCAACCTCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || || || || || || || || || || | ||| || || || ||| Sbjct 948154 CCTTCTTTGTCTTGAATCTTGGCCTTGACATTATCGATGGTATCCGAGGACTCAACCTCG 948213 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 |||||||| ||||| ||||| |||||||| ||||| ||||||||| ||| Sbjct 948214 AGCGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATTGTGT 948262 >seq18 Length=860724 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || || || || ||||| | |||||| || ||||| || | || || || Sbjct 790311 GTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAAGCTGCTTACCA 790252 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 |||||||||| ||||| || | ||||| ||||| || |||||||| ||||| || Sbjct 790251 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 790192 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 ||||| || || | |||| ||| || || ||||| || ||||||||||| || || || Sbjct 790191 ACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCCAGTGAGCGTT 790132 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 790131 TTGACGAAAATTTGCAT 790115 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || || || ||||| || ||||| | | Sbjct 789836 CCACCACGAAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAG 789777 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| ||||| || ||||| ||||| ||| Sbjct 789776 AGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGG 789717 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | || || || ||| Sbjct 789716 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACT 789657 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 789656 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Score = 105 bits (116), Expect = 2e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||| | ||| || || || || |||||||| | || ||||| || || || | Sbjct 790045 CGAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAA 789986 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || || || || |||||||||||||| || || || || ||||| ||||| | Sbjct 789985 GCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAA 789926 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || || ||||| || |||| || ||| || || || || || || ||||||| Sbjct 789925 TCTTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCC 789866 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| |||||||| Sbjct 789865 CAGTAAGCGTCTTCACGAAAATCTGCAT 789838 >seq15 Length=1191322 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| |||||||| ||||| ||||| ||||| || || | || ||| || || ||| Sbjct 976164 CCTTCCTTATCCTGAATTTTGGCTTTAACGTTGTCGATGGTGTCCGACGACTCCACCTCG 976105 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| || || ||||||||||| || ||||| Sbjct 976104 AGGGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATTTGCAT 976061 >seq1 Length=2076502 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 || || |||||||| || | ||| || ||||| || ||||| || || ||| || | Sbjct 1596449 ATTGGCATGAATGCTGACTTGATGTGCCAGTATATTGAGTTCGTTGCCGACCGTCTCCTA 1596390 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||||| || ||||||| || ||||| | ||||| |||| ||| ||||| | Sbjct 1596389 GTCGCACTGGGGAATGAGAAGGTCTACAACAAAACAAATCCGTTCGACTTCATGGACATG 1596330 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGC--GTGTCAG 269315 || || ||| | || ||||| ||||||||||| |||| ||||||| Sbjct 1596329 ATCTCTCTCCAGGGGAAGACTAACTTCTTCGAGAAGCGGGTGTCAG 1596284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649775017468