Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 seq18 96.9 3e-15 >seq5 Length=1591901 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||| || ||||||| ||||| || || ||||| || || || | Sbjct 947749 CCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAA 947808 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || ||||||||||| || | ||||| || || || ||||| ||| Sbjct 947809 AGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGA 947868 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| || || || || ||| ||| || | ||||| | || || Sbjct 947869 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAACC 947928 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 947929 TCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || || |||||||||| | || || ||||||| |||||||| || ||| || Sbjct 947557 TCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTGCTTTCCAGCAAAA 947616 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAAC 64371 || || || ||||| ||||||||||| |||||||| || || | | || ||||| || Sbjct 947617 ATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGA-TCTTCGCTTTCACGTT 947675 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || | || || || | || | ||||||||| ||||| || || || Sbjct 947676 GTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGTCAACGTCTTGAC 947735 Query 64432 GAAAATTTGCAT 64443 || || ||||| Sbjct 947736 AAAGATCTGCAT 947747 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||| || ||||| | || || ||||| |||||||||||||| | Sbjct 947977 CCTCCGCGCAGACGAAGAACGAGATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGAA 948036 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| || | || || || |||||||| ||||| Sbjct 948037 AGTGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGG 948096 Query 64337 ATTC 64340 |||| Sbjct 948097 ATTC 948100 >seq18 Length=860724 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| |||||||| | |||||| || |||| ||| || || || ||||| |||||||| | Sbjct 789332 ACCACCGCGCAAGCGAAGCACGAGGTGAAGCGTAGACTCCTTCTGAATATTGTAATCAGA 789273 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||||||||| ||||| || | || || || || ||||||||||| Sbjct 789272 TAGTGTGCGTCCGTCTTCAAGCTGTTTGCCAGCGAAGATCAGTCGTTGTTGGTCGGGAGG 789213 Query 64336 AAT 64338 || Sbjct 789212 GAT 789210 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||| | || || || || |||||||| || || | | |||||| | || |||||| Sbjct 790043 AGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGC 789984 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| | || || |||||||||||||| ||||| || ||||| || || || Sbjct 789983 TGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATC 789924 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGC 64415 ||| ||| || || | || | ||| || || || || | || | ||||| | Sbjct 789923 TTTGCCTTGACGTTGTCGATAGTGT--CCGACGACTCAACCTCAAGGGTAATAGTCTTCC 789866 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || || |||||||| ||||| Sbjct 789865 CAGTAAGCGTCTTCACGAAAATCTGCAT 789838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | || || ||| |||| ||||||||||| || || | Sbjct 790305 TCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAAGCTGCTTACCAGCGAAG 790246 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| || || || ||||| || || || || || ||| || Sbjct 790245 ATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTG 790186 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| | || || || | || | ||||| || || | ||||| ||| Sbjct 790185 TCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCCAGTGAGCGTTTTGACG 790126 Query 64433 AAAATTTGCAT 64443 ||||||||||| Sbjct 790125 AAAATTTGCAT 790115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642888858640