Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq18 100 3e-16 >seq5 Length=1591901 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | ||| | | |||||||| ||||| || |||||| Sbjct 947748 GCCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGA 947807 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||||||||| || || || | |||| ||||| ||||| || || || Sbjct 947808 AAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGG 947867 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | || | ||| |||| ||||| | Sbjct 947868 AATGCCTTCTTTGTC-CTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAA 947926 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| || | ||| || ||||| || ||||| || || ||||||||| || Sbjct 947927 CCTCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCATGCCT 947979 >seq18 Length=860724 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||| ||||| | ||| ||| ||||| || || || || | | Sbjct 790031 GACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCA 789972 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||| || || || || |||||||| ||| | |||| || | Sbjct 789971 AAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCC-TGAATCTTTGCCTTGAC 789913 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||| | |||||| ||||| | || | || || ||||| || || | Sbjct 789912 GTTGT-CGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCGTCT 789854 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 789853 TCACGAAAATCTGCAT 789838 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | || ||| |||||| || || ||||| | | Sbjct 790306 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAAGCTGCTTACCAGCGAA 790247 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| | ||||| ||||| || || || ||||| ||||| ||| || || | | Sbjct 790246 GATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 790187 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | || |||| |||||| ||||||| || | ||| || ||||| || ||||| || Sbjct 790186 GTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCCAGTGAGCGTTTTGAC 790127 Query 138603 AAAAATCTGCAT 138614 ||||| ||||| Sbjct 790126 GAAAATTTGCAT 790115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | |||||||||| || ||||||||||| Sbjct 789836 CCACCACGAAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAG 789777 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| ||||| || || |||| | || ||||| |||||||| || || Sbjct 789776 AGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGG 789717 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||| | ||||| | Sbjct 789716 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGATGACTCGA 789659 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || ||||| || || || || || |||||||| Sbjct 789658 CTTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260501796320