Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 102 8e-17 seq5 87.8 2e-12 >seq18 Length=860724 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| ||| | |||||| ||| || || || || || Sbjct 789529 GTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGCTTACCC 789470 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || || || || ||||| ||||||||||||||| || || |||| Sbjct 789469 GCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 789410 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| |||||||| ||||||||||| ||| | || || || || || || Sbjct 789409 ACGTTGT-CGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGTGT 789351 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 789350 CTTAACGAATATTTGCAT 789333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| || || || | ||||| ||| || ||||| || ||| Sbjct 790034 GTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCA 789975 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||||| |||||||| ||||| || |||||||| |||||| ||| | | ||| || Sbjct 789974 GCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCC-TGAATCTTTGCCTT 789916 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || ||||| ||| ||||||| ||| || || | ||| | || || || || || | Sbjct 789915 GACGTTGT-CGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCG 789857 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || ||||||||||| Sbjct 789856 TCTTCACGAAAATCTGCAT 789838 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| ||| | || | || || || ||||| || |||||||||||| Sbjct 789764 TCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTG 789705 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || || ||||| ||||| ||| |||||||| ||||||||||| ||| | Sbjct 789704 TCCTGAATCTTGGCCTTGACGTTGT-CGATGGTGTCCGATGACTCGACTTCGAGGGTGAT 789646 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || || || |||||||| Sbjct 789645 GGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || || | ||| | || | ||||||||| || |||||||||||||| Sbjct 789331 CCACCGCGCAAGCGAAGCACGAGGTGAAGCGTAGACTCCTTCTGAATATTGTAATCAGAT 789272 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || |||||||| |||||| |||||| ||| || || |||||||| Sbjct 789271 AGTGTGCGTCCGTCTTCAAGCTGTTTGCCAGCGAAGATCAGTCGTTGTTGGTCGGGAGGG 789212 Query 127007 ATGC 127010 |||| Sbjct 789211 ATGC 789208 >seq5 Length=1591901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 |||||| || ||||||||||| || || || || |||||||| |||||||| | Sbjct 947556 CTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTGCTTTCCAGCAAA 947615 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 || | || |||||||||||||| || || || || ||| ||| ||| || | ||| Sbjct 947616 AATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTTCGCTTTCACGTT 947675 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | || | ||||| | |||||| || | || | || ||||| |||| || || | Sbjct 947676 G-TCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGTCAACGTCTTGA 947734 Query 127101 CAAAAATCTGCATGGCT 127117 |||| ||||||||| || Sbjct 947735 CAAAGATCTGCATGCCT 947751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498981209440