Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq18 100 3e-16 seq5 91.5 1e-13 >seq18 Length=860724 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 ||||| || || || ||||| |||||||| || ||| || || | ||| |||| | Sbjct 789538 AGATGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGT 789479 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || || | |||| ||||| ||||| || || ||||| || || || ||||| Sbjct 789478 TGCTTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATC 789419 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | |||||| || |||||||||||||| || | || || || Sbjct 789418 TTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCTTTCC 789360 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || |||||||| Sbjct 789359 AGTGAGTGTCTTAACGAATATTTGCAT 789333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | ||||| || |||||||| || || |||||||| || || || || Sbjct 790260 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATC 790201 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | || ||||| |||||||| ||||| |||| ||| || || Sbjct 790200 TTCGCCTTGA-CGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCC 790142 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||||||||| Sbjct 790141 AGTGAGCGTTTTGACGAAAATTTGCAT 790115 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || || || || ||||| ||||| ||||| || || || ||| || | | || | Sbjct 789818 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTC--TGAGAGTGTCCGCCCGTCTT 789761 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || ||||| ||| | || | ||||| ||||| || || ||||| || || || | Sbjct 789760 CGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTCCT 789701 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||| || |||| || | || | |||||| || |||||||||||||| || | || Sbjct 789700 GAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGGTC 789642 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || || || ||||| Sbjct 789641 TTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 >seq5 Length=1591901 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | || ||||| || || || ||||| || |||||||| ||| Sbjct 947746 ATGCCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCG 947805 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | || || || ||| | || | ||||| || || || Sbjct 947806 GAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGG 947865 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| || ||||| || |||| || | ||| ||||| ||||| Sbjct 947866 GGAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCA 947925 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | ||| || || || || ||||| || || || ||||| Sbjct 947926 ACCTCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001471087760