Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 167 3e-36 >seq1 Length=2076502 Score = 167 bits (184), Expect = 3e-36 Identities = 344/503 (68%), Gaps = 9/503 (2%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| |||||| ||||| ||||| |||||| | || ||||||||||| || ||| Sbjct 1596643 CCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTTC 1596702 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||| |||||| || | |||||| || ||||||||||| || || ||| || || Sbjct 1596703 TTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAAG 1596762 Query 127658 GCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716 |||| ||||| ||||| |||| | | | | | | ||| |||| | | ||||| | Sbjct 1596763 GCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGT-CAGCAATCCACCTGAGAGCCCATTC 1596821 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 ||||| |||| ||| || |||| ||||| | || || || || | || | || | Sbjct 1596822 CGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGGC 1596881 Query 127777 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTT-CAT 127835 | ||| |||||||| | || ||||| ||||| || ||| ||||| ||| ||| Sbjct 1596882 AGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCAT 1596941 Query 127836 TATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAAT 127895 || ||| || | |||||| | || || ||| | ||| || || | || |||| Sbjct 1596942 CAT-AATCTGGAACCCATAGAAACACCGAGCCTCGGCGACCTGAACTTCGTTGG-AAAAG 1596999 Query 127896 TGTTATTG-ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATAC 127954 ||| | | ||||||| || || |||||||| ||||||| || || |||| | Sbjct 1597000 CGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGA 1597059 Query 127955 TTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCTTTGAG 128011 ||||| | | || || ||||| | || | |||||||||| |||||||| ||| Sbjct 1597060 GAGATGAAGTGGCGCTCGTTGTCGTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAG 1597119 Query 128012 AGATCTACCTCCTCCGCAGTCCA 128034 || || | |||||||| ||||| Sbjct 1597120 AGGTCCATTTCCTCCGCTGTCCA 1597142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504853334960