Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 113 7e-20 seq3 98.7 2e-15 >seq1 Length=2076502 Score = 113 bits (124), Expect = 7e-20 Identities = 319/490 (65%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||||||||| ||||| ||| |||| ||||| || || |||| ||| ||||| Sbjct 1596613 AACAGGAGGCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAG 1596672 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | | ||| ||||||| || || || | ||| || |||| ||||| | || Sbjct 1596673 AAGGTTAAGCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCT 1596732 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| || || || || ||||| || ||||| | || | |||| | || Sbjct 1596733 GAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGT 1596792 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 |||| ||||||| |||||||| |||||||| |||||| || ||| ||| Sbjct 1596793 CGGTCAGCAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCA 1596852 Query 160154 ACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTC 160213 ||||| | |||| ||| |||| |||||||||| ||| | || || Sbjct 1596853 ACGGCATCGAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGG 1596912 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 || ||| | || | ||| | ||||| || ||||| || |||||| | ||| Sbjct 1596913 GAATACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCC 1596972 Query 160274 TCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCG 160333 || ||| || || | | || | || || ||| |||| || | ||| ||| Sbjct 1596973 TCGGCGACCTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCG 1597032 Query 160334 GCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTC 160393 | ||| |||||||| || | |||||||||||||| || | ||||| | ||| || | Sbjct 1597033 GAGGCAGCAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGTTGTCGTTAAGGCGG 1597092 Query 160394 TTTTCCCAGT 160403 || | ||||| Sbjct 1597093 TTGTTCCAGT 1597102 >seq3 Length=1723946 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || |||||||| || || | |||| ||||| | |||||||||||||||||||| Sbjct 705511 GTCGACTGTGAACTGGATAGCTTGAGCGGCGGGCCTCGTCCTCAGATAGTACATGCCGGT 705452 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CGTTGGGGT 203960 || | |||||| | ||||||||| | ||||||| | ||| | || | ||| || | Sbjct 705451 TTTCAAGCCCTTTTTCCACCCGTAGAAGTGCATGCTTGTCAGCTGGCCGAGCGTCGGCG- 705393 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | || ||| ||||| | ||| |||||| |||| || ||||| ||||| || || Sbjct 705392 CTTGCAGGTGGATGTTTAAGCTCTGACTTTGGCAGATG-AACGCGCCGCGATCCGCAGCG 705334 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | | ||| | ||||||| || ||||| || |||||| Sbjct 705333 AGGTCGATGACCTTCTTCTGGCTGATTTCCCAAACGGTCTTG 705292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152158531360