Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18 136 4e-27 seq5 109 6e-19 seq8 86.0 7e-12 seq15 82.4 9e-11 >seq18 Length=860724 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 46391 TGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGC 46450 |||| || |||||||| || || |||||||| || || || ||| |||| || |||||| Sbjct 790317 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAAGCTGC 790258 Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510 || || ||||| ||||||||||||||||| | || | || ||||||||| ||||||| Sbjct 790257 TTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTC 790198 Query 46511 TTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 ||||| ||| | | | ||| ||| ||| || || || | || || || || || || Sbjct 790197 GCCTTGA-CGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCCAGT 790139 Query 46570 CAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || |||||||| Sbjct 790138 GAGCGTTTTGACGAAAATTTGCAT 790115 Score = 120 bits (132), Expect = 3e-22 Identities = 156/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| ||||| | ||| |||||| ||||||||||||||||| |||||||| | || | Sbjct 789543 CACCGAGATGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTT 789484 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 46502 | || ||||| || || || |||| ||| || ||||| | || | || |||||||||| Sbjct 789483 CCAGTTGCTTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCT 789424 Query 46503 TGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||||| ||| | | | ||||| ||| || || || | |||||||| Sbjct 789423 GAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTC 789365 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| || |||||||| Sbjct 789364 TTTCCAGTGAGTGTCTTAACGAATATTTGCAT 789333 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || ||| |||| ||||||||||| |||||||| Sbjct 789801 CTCCTTCTGGATGTTGTAGTCTGAGAGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAA 789742 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||||| || | || |||||||||| ||||| ||||| ||| Sbjct 789741 AATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 789683 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | |||||||| ||||| || || || || | Sbjct 789682 TGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGA 789623 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 789622 CGAAGATCTGCAT 789610 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || || ||||| |||||||||||| | || || ||||||||||| || || Sbjct 790029 CTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAA 789970 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||||| ||| | || ||| |||||| ||||| ||||| ||| Sbjct 789969 GATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTGA-CGT 789911 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||| || || || | || || || || || || ||||| || | Sbjct 789910 TGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCGTCTTCA 789851 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 789850 CGAAAATCTGCAT 789838 >seq5 Length=1591901 Score = 109 bits (120), Expect = 6e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | || ||||| || ||||||||||| || || | || || |||| || ||| Sbjct 947542 AGATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGC 947601 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 ||||| || || || || | ||| ||||| |||| || | | || || ||| |||| Sbjct 947602 TGCTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATC 947661 Query 46508 TTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||| ||| | | | |||||| || || || |||| ||||||||| ||||| Sbjct 947662 TTC-GCTTTCACGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCC 947720 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||| || |||||||| ||||| Sbjct 947721 CGTCAACGTCTTGACAAAGATCTGCAT 947747 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||| | || |||||| || ||||| ||||||| Sbjct 947747 TGCCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGG 947806 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| |||||||||||||| ||||| || | || || || |||| | Sbjct 947807 AAAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGG 947866 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||||| | | | || ||| || || | Sbjct 947867 GAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAA 947926 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 947927 CCTCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 >seq8 Length=1449076 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||| || ||||| | || |||||||||||||| ||||| Sbjct 782514 CTCCTTTTGAATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 782573 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| |||||||||||||| Sbjct 782574 GATCAGGCGCTGCTGGTCGG 782593 >seq15 Length=1191322 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| ||||||||| | || ||||||||||| || ||||| Sbjct 976305 CTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAA 976246 Query 46462 TATCAAGCGCTGCTGGTC 46479 |||| ||| |||||||| Sbjct 976245 GATCAGGCGTTGCTGGTC 976228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236237963120