Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 239 5e-58 seq18 132 5e-26 seq8 93.3 4e-14 seq15 82.4 8e-11 >seq1 Length=2076502 Score = 239 bits (264), Expect = 5e-58 Identities = 391/561 (70%), Gaps = 7/561 (1%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | ||| ||||| ||| ||||| |||||| || | | |||||| || ||| Sbjct 1596611 TGAACAGGAGGCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGG 1596670 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || ||||| |||||||| |||||||| || | ||| || |||| ||| || | Sbjct 1596671 AGAAGGTTAAGCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATC 1596730 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| || || || || || || || || || || ||| |||| || | | Sbjct 1596731 CTGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGT 1596790 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | | || ||||| | || |||||||| ||||| | |||| ||| || || || | Sbjct 1596791 GTCGGTCAGCAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCT 1596850 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAG 133181 | | ||| | |||| | | | | || || | | | ||| ||||||||||| Sbjct 1596851 CAACGGCATCGAACAGAT--ACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAG 1596908 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 | |||||| | || ||||| | ||| ||||| || || || || || || ||||| Sbjct 1596909 GAGGGAATACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCG 1596968 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 |||||| | ||||| ||||| | | || || |||| || ||| || ||||| || || Sbjct 1596969 AGCCTCGGCGACCTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCC 1597028 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 ||| ||| || || ||||| || ||||| |||||| ||||||||||||||||| | Sbjct 1597029 ATCGGAGGCAGCAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGTTGTCGTTAAG 1597088 Query 133362 GCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 ||| | ||||||| | ||||| || ||||||| ||||| | ||||| ||||| Sbjct 1597089 GCGGTTGTTCCAGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGA 1597148 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 || || || || || ||||| Sbjct 1597149 AGCTTCAGCCTTCTTATACAT 1597169 Score = 197 bits (218), Expect = 1e-45 Identities = 388/563 (69%), Gaps = 13/563 (2%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT-CGTCCCTGGAAATGAGTTCGTTG 132942 |||||| ||| || || ||||| || ||||||| | |||| | ||||||||||| Sbjct 1598857 TGAACAGCAAACACGCGAAGTCCGTGTG-AAGCCCTTCATCCCGGCTGATGAGTTCGTTC 1598799 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 || || | ||| ||||||| ||||| || || | ||| ||||| | ||||| Sbjct 1598798 GAAAATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGAT 1598739 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-C 133061 || || || || | || || || || ||||| || || || | || | ||||| | | Sbjct 1598738 CCTGAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAACGTCGAC 1598679 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 | ||| ||| | ||||| | |||||||| |||||||| |||| | | || || || Sbjct 1598678 TGCTTGTCTG-CTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGT 1598620 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTT-CTCTTCCGAGGAACGC--ACGTAGGTGTCGAT 133178 ||| || |||| |||| | |||| ||| |||| || | | | ||||| || || Sbjct 1598619 TTCAATAGCGTCAAACAGGAG-AGTTCGCTCGTCCG--GATCTCTGATATAGGTATCAAT 1598563 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 ||| ||| || | |||||||||||||| || || | ||||||| || || ||||| Sbjct 1598562 GAGCAACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCA 1598503 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 |||||||| ||||||| || || | | || || || || || |||||||| ||||| Sbjct 1598502 ACGCGCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGAT 1598443 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 ||| || ||| |||||||||||||| || || |||||||| || ||||| ||| Sbjct 1598442 GCCATCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAGTT 1598383 Query 133359 CA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAA 133415 | | | |||||| ||| | ||||| || | ||||| | |||||||| Sbjct 1598382 GAGTTTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAA 1598323 Query 133416 CGACGCCTCGGCTTTTTTGTACA 133438 || |||| |||| |||||||| Sbjct 1598322 AGATGCCTGTGCTTGTTTGTACA 1598300 >seq18 Length=860724 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | | Sbjct 789610 ATGCAGATCTTCGTCAAGACACTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCG 789669 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || ||| ||||||| Sbjct 789670 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 789728 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||||| ||| || || ||||| || |||| ||| || ||| |||||||| Sbjct 789729 ACAACGTCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGGCGGACACTCTCAGACTACAA 789788 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 789789 CATCCAGAAGGA 789800 Score = 116 bits (128), Expect = 4e-21 Identities = 156/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || ||||| || || ||||||||| |||| |||||| | | Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || || | ||||| Sbjct 789393 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 789451 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||||| || || ||||| || | ||||| ||| ||||||||| Sbjct 789452 ACAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAA 789511 Query 38423 CATCCAAAAGGAAGCGACGCTGCAT-TTGGTGC 38454 ||||| ||||| | || || ||| | ||||| Sbjct 789512 TATCCAGAAGGAGTCCACACTTCATCTCGGTGC 789544 Score = 116 bits (128), Expect = 4e-21 Identities = 155/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||||||||| || || || || ||| |||| |||||| | || Sbjct 790115 ATGCAAATTTTCGTCAAAACGCTCACTGGGAAGACGATTACCCTCGAGGTCGAGTCGTCC 790174 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | || | || |||| ||||| || || || ||| | ||||| Sbjct 790175 GATACGATTGACAACG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 790233 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || ||||| || |||| ||| || ||| |||||||| Sbjct 790234 GCAGCGCTTGATCTTCGCTGGTAAGCAGCTTGAGGACGGGCGGACGCTCTCGGACTACAA 790293 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGG 38451 ||| || ||||| ||| || ||||| |||| Sbjct 790294 CATTCAGAAGGAGAGC-ACCCTGCACTTGG 790322 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || || ||| | || || ||| | | Sbjct 789838 ATGCAGATTTTCGTGAAGACGCTTACTGGGAAGACTATTACCCTTGAGGTTGAGTCGTCG 789897 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| || | ||||||||||| ||||| ||||||| Sbjct 789898 GACACTATCGACAACG-TCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCGCCCGACCA 789956 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | |||||| || ||||| || Sbjct 789957 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTCTATCTGACTATAA 790016 Query 38423 CATCCAAAAGGAAGCGACGCTGCAT 38447 ||| || ||||| | || || ||| Sbjct 790017 CATTCAGAAGGAGTCCACTCTCCAT 790041 >seq8 Length=1449076 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 38347 GAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCA 38406 |||| || ||||||| ||||| || || | ||| ||||| ||||| || || | |||| Sbjct 782602 GAATCCCTCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCA 782543 Query 38407 CCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAG 38466 |||||| |||||||||||| |||||||| | || || || ||||| || ||| | | | Sbjct 782542 CCCTCAGCGACTACAACATTCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTG 782483 Query 38467 GCGG 38470 |||| Sbjct 782482 GCGG 782479 >seq15 Length=1191322 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 |||||| | ||||| || || || || | ||| || || ||||| || || | ||||| Sbjct 976219 ATTCCCCCTGACCAGCAACGCCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGACGCACT 976278 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || | ||||||||||||||| ||||| ||||||| || ||||| || || Sbjct 976279 CTAAGCGACTACAACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTTCG 976328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170886839040