Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq18 100 2e-16 seq5 82.4 5e-11 >seq18 Length=860724 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || || ||||| |||||||| || Sbjct 789800 TCCTTCTGGATGTTGTAGTCTGAGAGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAAA 789741 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| ||||| | || | ||||||||||| |||||| ||||| Sbjct 789740 ATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC---- 789685 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || |||| ||| ||||| || || ||||| ||||| Sbjct 789684 GTTGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTT 789625 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 789624 GACGAAGATCTGCATA 789609 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| || || | || |||| || ||||| || || ||||| Sbjct 790028 TCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAG 789969 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||| ||||| |||||| ||||| Sbjct 789968 ATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTGAC---- 789913 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | |||||| || | ||| || || || || || || ||||| Sbjct 789912 GTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTAAGCGTCTT 789853 Query 34967 CACAAAGATCTGCAT 34981 ||| || |||||||| Sbjct 789852 CACGAAAATCTGCAT 789838 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| |||| || ||||| || || ||||| || || | || |||| ||||| || Sbjct 789535 TGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGC 789476 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || ||||| || || ||||| ||||| | || | ||||||||||| |||||| Sbjct 789475 TTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTG 789416 Query 34899 TGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||||| | | ||||| | ||| | ||| || |||| ||| ||||| ||||| Sbjct 789415 GCCTTGAC----GTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCTTTCC 789360 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || || || |||||| Sbjct 789359 AGTGAGTGTCTTAACGAATATTTGCATA 789332 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34774 CCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 ||||||| | ||||| || ||||||||||| |||||||| || | || | || || | Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| || || || || || | || |||||||| | || | || |||||||| | Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 ||||| |||||| | |||| || | ||| || |||| ||| || || || | Sbjct 790202 TCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCC 790143 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || || || || |||||| Sbjct 790142 CAGTGAGCGTTTTGACGAAAATTTGCATA 790114 >seq5 Length=1591901 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||||| |||||||| || || || || || | | ||| | || || ||||| Sbjct 947545 TGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTGC 947604 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 ||||| ||||| || || |||||||| || | || | ||| || || || |||||| Sbjct 947605 TTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTTC 947664 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 ||| ||| | || | || | ||| || || | || ||||| || ||||| Sbjct 947665 GCTTTCACGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGTC 947724 Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981 | ||||| |||||||||||||| Sbjct 947725 AACGTCTTGACAAAGATCTGCAT 947747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632389319568