Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 168 8e-37 >seq1 Length=2076502 Score = 168 bits (186), Expect = 8e-37 Identities = 384/576 (67%), Gaps = 5/576 (1%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| | |||| | ||||||||||| ||| | ||||| || | || || | Sbjct 1596604 AGATGGCTGAACAGGAGGCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGC 1596663 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| || || ||||| |||||||| || || | ||| || | |||||| || || ||| Sbjct 1596664 TCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCA 1596723 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 |||||||| || ||||| |||||||| || || ||||| ||||| || | ||| | || Sbjct 1596724 AATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAA 1596783 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | | | | | |||||| | || ||||| || |||||||| || | || || Sbjct 1596784 GTCGAGTGTCGGTCAGCAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGG 1596843 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 || ||||| | | || || |||||| ||||| | | ||| || | || | || Sbjct 1596844 ATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCG 1596903 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || | | ||| | || || || || ||||| || ||||| || || || ||| Sbjct 1596904 ATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAA 1596963 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362 || | || || | | ||| ||||| | |||| | ||||| |||||| ||||| ||| Sbjct 1596964 CACCGAGCCTCGGCGACCTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACT 1597023 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 || ||||| || ||||| || || | || || || || || || | || Sbjct 1597024 ATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGT-TGTC 1597082 Query 19423 GTTAATG----TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCA 19478 ||||| | | ||||| || | || ||| || || | || | ||| || ||||||| Sbjct 1597083 GTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCA 1597142 Query 19479 AAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 || ||||| || || || |||||||| | ||| || Sbjct 1597143 GAACGAAGCTTCAGCCTTCTTATACATCTGCCAGAT 1597178 Score = 143 bits (158), Expect = 3e-29 Identities = 377/575 (66%), Gaps = 3/575 (1%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| | |||| |||||| || || || || || || || || | || || | | Sbjct 1598864 AGATGAGTGAACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGT 1598805 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || |||||||| | |||||||| | || | || || | ||||||||| ||||| Sbjct 1598804 TCGTTCGAAAATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCG 1598745 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||||| || || ||||||||||| || || || || || || |||||||| || | Sbjct 1598744 AACGATCCTGAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAAC 1598685 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | | | || | ||||| | || |||||||| ||||| || | | || Sbjct 1598684 GTCGACTGCTTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGA 1598625 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 ||||| || |||| | ||| || | ||||| || | |||| | | ||| | ||| Sbjct 1598624 ATTGTTTCAATAGCGTCAAACAGGAGAGTTCGCTCGTCCGGATCTCTGATATAGGTATCA 1598565 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || | || ||| | || || || | |||||||| | ||||| || || || Sbjct 1598564 ATGAGCAACGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAG 1598505 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362 || | || || | | ||| || || | |||| | ||| || | ||||| ||||| Sbjct 1598504 CAACGCGCCTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACG 1598445 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 || |||||| || || ||||| || | ||||| || |||| | ||| | ||| Sbjct 1598444 ATGCCATCAGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAG 1598385 Query 19423 GTTAAT---GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAA 19479 | | | | ||||| || | | || | || | ||||| ||| || | |||||| Sbjct 1598384 TTGAGTTTGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAA 1598325 Query 19480 AAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||||| |||| ||||| ||| |||| | |||||| Sbjct 1598324 AAAGATGCCTGTGCTTGTTTGTACAGCTGCCATAT 1598290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106649933840