Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 8e-15 seq11 86.0 5e-11 >seq5 Length=1591901 Score = 98.7 bits (108), Expect = 8e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 563269 AGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGT 563328 ||||||||||| || ||||| ||||||||||| | | || | | ||||| || Sbjct 947542 AGATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGC 947601 Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || ||||| ||||||||||| | ||||||||| |||||||| ||||||||||| || || Sbjct 947602 TGCTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATC 947661 Query 563389 TT 563390 || Sbjct 947662 TT 947663 >seq11 Length=1246474 Score = 86.0 bits (94), Expect = 5e-11 Identities = 129/180 (72%), Gaps = 15/180 (8%) Strand=Plus/Minus Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || ||||| || || ||||| ||||| || || || |||||||| ||||| Sbjct 934424 TGTCCCTGCATACTTCAACGACTCTCAACGCTTGGCCACCAAGGATGCTGGCGCCATTGC 934365 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| || |||| || ||||| ||||||||||| ||||| ||||| |||| || || || Sbjct 934364 TGGCCTGGATGTCCTCCGTATCATCAATGAACCCACTGCCGCTGCCATTGCGTACGGTCT 934305 Query 550531 TGAT----AAACATAA--TGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGG 550581 ||| ||||| || ||| |||||| || || ||||| |||| ||||||| Sbjct 934304 CGATCGTCAAACAAAAACTGA-GAAGAAC-----GTCCTGATCTTCGATTTGGGTGGAGG 934251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029279817339940