Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq18 100 2e-16 seq5 98.7 8e-16 >seq18 Length=860724 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| || || ||||||||| | || | || || | ||| Sbjct 790041 ATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTG 789982 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| ||||| ||||| || || | |||| |||||| ||||| |||||| Sbjct 789981 CTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTT 789922 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || || | | || || |||| ||| ||||| | ||||| || || || || Sbjct 789921 TGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGT 789862 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | || || || |||||||||||| Sbjct 789861 AAGCGTCTTCACGAAAATCTGCATC 789837 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || |||||||| || || ||| | ||| | || |||| || Sbjct 789536 ATGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTG 789477 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| ||||| ||||| || ||||| || | || | |||||||||||| |||||| Sbjct 789476 CTTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 789417 >seq5 Length=1591901 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||||||||||| || ||||||||||| || | | || |||| || | ||| Sbjct 947544 ATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTG 947603 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| || || || || ||||| | |||| || || || || ||||| Sbjct 947604 CTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTT 947663 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| || | | || || || | ||| ||||||| ||| || || || ||||| Sbjct 947664 CGCTTTCACGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGT 947723 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || ||||| |||||||| Sbjct 947724 CAACGTCTTGACAAAGATCTGCAT 947747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936179340838