Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 208 1e-48 seq13 86.0 1e-11 >seq1 Length=2076502 Score = 208 bits (230), Expect = 1e-48 Identities = 377/550 (69%), Gaps = 5/550 (1%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| ||||| || | |||| ||| || || ||||| |||||| | ||||||||| | Sbjct 1596621 GCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAA 1596680 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||||| || | | || | |||||| || | || || || || |||||||| Sbjct 1596681 GCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAA 1596740 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| || || || || || || || ||| | || |||||| | || ||| | Sbjct 1596741 GATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGTCAGC 1596800 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| || ||||| || ||||||||||||||||| || || ||||| | ||| Sbjct 1596801 AATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATC 1596860 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 ||| || | || | ||| | || ||| | || || || || | ||| | Sbjct 1596861 GAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGT 1596920 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | || || || ||||||||||| ||||| || ||||| || Sbjct 1596921 CTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCCTCGGCGAC 1596980 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| ||||| |||| || | || |||| ||||||||||||||||||||| || ||||| Sbjct 1596981 CTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGC 1597040 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCC 48605 ||||||||| ||||| || | ||| ||||||||||||| | | || || |||| Sbjct 1597041 AAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGTTGTCGTTAAG-GCGGTTGTTCC 1597099 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | || || ||||||| ||| ||| | |||||||| || || || | Sbjct 1597100 AGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCT 1597159 Query 48666 TTTTGTACAT 48675 | || ||||| Sbjct 1597160 TCTTATACAT 1597169 Score = 159 bits (176), Expect = 6e-34 Identities = 370/556 (67%), Gaps = 9/556 (2%) Strand=Plus/Minus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| || || |||||| |||| | ||||| |||||||||||||| |||| || || Sbjct 1598852 AGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAAAAT 1598793 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||| |||||||||| || | || || | |||||| |||| ||||| || || ||| Sbjct 1598792 GTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCTGAG 1598733 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 || || || || ||||| || ||||| ||| || || || | || | | | |||| Sbjct 1598732 AAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAACGTCGACTGCTTG 1598673 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 |||| ||||| |||||||| || ||||| ||||||| | || || || || || Sbjct 1598672 TCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTCAATA 1598613 Query 48365 GCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTT 48421 || || || | | ||| | | || | |||||| | |||||| | Sbjct 1598612 GCGTCAAACAGGAGAGTTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCAAC--- 1598556 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | ||| |||| ||||| || || ||||| | | || || || |||||| | ||| Sbjct 1598555 GAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGCGCC 1598496 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 ||| |||||| || || |||| || | || | || || || || || || ||||| Sbjct 1598495 TCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCATCA 1598436 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---A 48598 || ||||| || ||||| || ||||| | ||||| || ||||| | |||| Sbjct 1598435 GAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAGTTGAGTTTG 1598376 Query 48599 GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 |||||| || | ||| | ||| || | ||| || ||||||| || || || Sbjct 1598375 TTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGATGCC 1598316 Query 48659 AGTGCTTTTTTGTACA 48674 |||||| |||||||| Sbjct 1598315 TGTGCTTGTTTGTACA 1598300 >seq13 Length=1228586 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 38964 AGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTA 39023 || ||||||| ||| ||||||||||| ||||||| ||| ||||||| || || | || Sbjct 408387 AGTTCCCACCGGTTCGCGGAGAAGAGGAGGTGGATAGCGCGGTCGTCGAGATCGGACTCT 408328 Query 39024 CTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 | ||||| ||| ||||||||||||||||| || |||||||| Sbjct 408327 GATTTAAGGTAGGAGTCGATCATCTTTCCGATGGCGGTAGTTCTGTC 408281 Score = 84.2 bits (92), Expect = 4e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 48460 GAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAG 48519 |||||| |||||| || |||||| ||||| |||| ||||||| | |||| Sbjct 642832 GAACCCATAGAAGCACCGAGCCTCAGCAACCTGAACTTTGTTGGAGAAGTGTTTGAGCAA 642773 Query 48520 ATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATG 48579 |||||||||||||||||||||||| |||| |||||||| ||||||| || ||| || Sbjct 642772 ATTCTCATTGACTATCCCATCTGAGGCAG-TAAGAAGGCGGGGACATGAGAAATGAAGTG 642714 Query 48580 GCGCTCGTTGT 48590 || | |||| Sbjct 642713 ATGCACATTGT 642703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529236887040