Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 seq3 109 1e-18 >seq1 Length=2076502 Score = 188 bits (208), Expect = 1e-42 Identities = 388/569 (68%), Gaps = 15/569 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||| ||||||||| || || |||||| || || || || || || Sbjct 1597178 ATCTGGCAGATGTATAAGAAGGCTGAAGCTTCGTTCTGGACAGCGGAGGAAATGGACCTC 1597119 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | ||||| | ||| |||| || || || | | | |||||| || || || Sbjct 1597118 TCGAAGGATCTTCACGACTGGAACAACCGCCTTAACGACA-ACGAGCGCCACTTCATCTC 1597060 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || |||||||| ||||| ||||| ||||| || |||||| || ||| | Sbjct 1597059 TCACGTCCTCGCCTTCTTTGCTGCCTCCGATGGGATAGTCAATGAGAATTTGCTCGAACG 1597000 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 || ||| ||||| ||| || ||||| ||||||||| || |||||||| || Sbjct 1596999 CTTTTCCAACGAAGTTCAGGTCGCCGAGGCTCGGTGTTTCTATGGGTTCCAGATTATGAT 1596940 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 ||||| | ||||| ||| |||| || || || || || ||||| | || | Sbjct 1596939 GGAAAACATCCACTCCGAGACGTATTCC---CTCCTCATCGACACTTACATCAAGGATGC 1596883 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||||| | || ||||| | |||| | ||| ||| || ||||||||| |||||| Sbjct 1596882 TGCCGAGCGGGAGTATCTGTTCGATGCCGTTGAGACCATCCCTTGCATCAAGAAGAAGGC 1596823 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| | | |||||| | | | || | | || || | ||| || || || | Sbjct 1596822 GGAATGGGCTCTCAGGTGGATTG-CTGACCGACACTCGACTTTCGCCGAACGTCTCGTTG 1596764 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 ||||||| ||||| || || ||||| ||| || || ||||| ||||||||||| | | Sbjct 1596763 CCTTTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGA 1596704 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || | | | || | |||||| || | ||| ||||| |||||||| ||| | || ||| Sbjct 1596703 AG-AAACGCGGTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAG 1596645 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 || | || | |||||||| ||||| || Sbjct 1596644 GGCATGCATACCGATTTTGCATGCCTCCT 1596616 Score = 105 bits (116), Expect = 1e-17 Identities = 294/445 (66%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| || || || ||||||||||| || || ||||| || || || | || ||| Sbjct 1598417 TGGCCTTTTTCGCTGCCTCTGATGGCATCGTTAACGAAAACCTCGTTGAACGGTTTTCCA 1598476 Query 25661 GGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 || || ||| | ||||| || ||||| ||||| || | || ||||| | Sbjct 1598477 ACGAGGTTCAGGTGGCTGAGGCGCGTTGCTTCTATGGTTTTCAAACCATGATAGAAAACG 1598536 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGCCGAGAGA 25779 | ||||| ||| || | ||| | ||| || || || | ||| | |||| || Sbjct 1598537 TACACTCGGAGACCTACTCGTTGCTCATTGAT-ACCTATATCAGAGATCCGGACGAGCGA 1598595 Query 25780 GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCC 25839 || ||||||| || || || || || ||||||| | ||||| ||||| Sbjct 1598596 ACTCTCCTGTTTGACGCTATTGAAACAATTCCTTCCATCAAGCGCAAGGCCGATTGGGCG 1598655 Query 25840 ATGAAGTGGATCAACAGCCAGAGCGCT--ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTG 25897 | | |||||| | ||| || ||| | ||||||| || | || || ||||| |||| Sbjct 1598656 CTCAGGTGGAT-AGCAGACA-AGCAGTCGACGTTTGCGGAAAGACTTGTCGCCTTCGCTG 1598713 Query 25898 CTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGG 25957 ||||||| || || |||||| || ||||| || | || |||||| | ||| || | Sbjct 1598714 CTGTGGAAGGTATATTTTTCTCAGGATCGTTCGCTTCAATATTCTGGATGAAGAAGCGCG 1598773 Query 25958 GGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACA 26017 | |||||| || || ||||| ||||| ||||||||| |||| || || || |||| Sbjct 1598774 GTTTCATGCCTGGCCTCACATTTTCGAACGAACTCATCAGCCGGGATGAAGGGCTTCACA 1598833 Query 26018 GAGATTTTGCCTGCCTGCTCTACAC 26042 || || || || |||| | ||| Sbjct 1598834 CGGACTTCGCGTGTTTGCTGTTCAC 1598858 >seq3 Length=1723946 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 ||||| ||||| ||||| || || | || ||||| || | ||| ||| ||| || Sbjct 704109 AAGAGATCCGGAATCCAAAGGGCATAGAAAAGATCCCTCGCTCGCACCTCTTCCTTTCCA 704050 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 | |||||||||||||||||| ||||| |||| ||||| ||||| || || | ||||| | Sbjct 704049 TGGTTTTTCCTCAGATCCAAGAACTCGAAAACATCAGCATGCCATGGTTCAATATAGATG 703990 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | ||||| || || ||||||||||| || || || Sbjct 703989 GCGAAGGCGCCAGGGCGTTTGTTGCCACCTTGGTCGAC 703952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841247168640