Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq18 105 4e-17 seq5 100 2e-15 >seq18 Length=860724 Score = 105 bits (116), Expect = 4e-17 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| |||||| | ||| ||||| ||||| |||||||| || ||||| || Sbjct 790016 TTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGC 789957 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| || || ||||| ||||||||| ||||| || ||||| || Sbjct 789956 TGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTGACGTTGTCGATAGTGTCC 789897 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || | ||||||||||||| || || || || ||||| |||||||| || Sbjct 789896 GACGACTCAACCT-CAAGGGTAATAGTCTTCCCAGTAAGCGTCTTCACGAAAATCTG 789841 Score = 95.1 bits (104), Expect = 8e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 480567 AGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGT 480626 ||||||||||| || || | ||| || || | ||||| | |||||| ||| Sbjct 789538 AGATGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGT 789479 Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| || ||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct 789478 TGCTTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATC 789419 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||||| || || || || | | | | ||| ||||| || || || || Sbjct 789418 TTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGA-CTTCGAGGGTGATGGTCTTTCC 789360 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||||||||| ||||| Sbjct 789359 AGTGAGTGTCTTAACGAATATTTG 789336 >seq5 Length=1591901 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || |||||||| || || || || |||||| || | ||||| Sbjct 947755 CGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTA 947814 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || || || ||||| ||||| || || |||||||||||||| || ||||| ||| Sbjct 947815 CGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCT 947874 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 || ||||| |||||||| |||||| ||||| ||||| | || | || || || Sbjct 947875 TCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAA-CCTCGAG 947933 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || || ||||| || || Sbjct 947934 AGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTG 947972 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 480567 AGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGT 480626 |||||||| || || ||||| | ||| ||||| | | || | ||||| || Sbjct 947542 AGATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGC 947601 Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 |||||||||||||||||||| ||||| ||||| |||||||| ||||| || || || ||| Sbjct 947602 TGCTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATC 947661 Query 480687 TTTTGTTTGACAGCTTCAATAGTATC 480712 || ||| || |||||||| || Sbjct 947662 TTCGCTTTCACGTTGTCAATAGTGTC 947687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268166074175288