Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq41 96.9 4e-15 >seq1 Length=2076502 Score = 136 bits (150), Expect = 5e-27 Identities = 337/503 (67%), Gaps = 9/503 (2%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| ||||| ||| | || | || || |||||| |||||||||| | || | || Sbjct 1597142 TGGACAGCGGAGGAAATGGACCTCTCGAAGGATCTTCACGACTGGAACAACCGCCTTAAC 1597083 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || || || | ||||| || |||| || |||||||||| |||||||| || Sbjct 1597082 GACAACGAGCGCCACTTCATCTCTCACGTCCTCGCCTTCTTTGCTGCCTCCGATGGGATA 1597023 Query 64831 GTTTTTGAGAATAT-CAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||||| | | ||| |||| | | ||||| ||| | ||| || || | Sbjct 1597022 GTCAATGAGAATTTGCTCGAACGCTTTTCCA-ACGAAGTTCAGGTCGCCGAGGCTCGGTG 1596964 Query 64890 ATTCTACGCATATCAATGCCATAATG-AAATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||| | | || | || ||| ||| | || ||| || ||||| | | Sbjct 1596963 TTTCTATGGGT-TCCAGATTATGATGGAAAACATCCACTCCGAGACGTATTCCCTCCTCA 1596905 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTG 65008 | |||| ||||| ||||||| | || | || | | || || ||| | | || Sbjct 1596904 TCGACACTTACATCAAGGATGCTGCCGAGCGGGAGTATCTGTTCGATGCCGTTGAGACCA 1596845 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGC 65067 | || || || ||||||||||| ||||||| | | ||| ||| || | |||| Sbjct 1596844 TCCCTTGCATCAAGAAGAAGGCGGAATGGGCTCTCAGGTGGATTGCTGACCGACACTCGA 1596785 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 | |||||||| || || |||| ||||| ||| || |||||||||||||| || ||| Sbjct 1596784 -CTTTCGCCGAACGTCTCGTTGCCTTTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCA 1596726 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || | | || | ||| ||||||| || ||||||||||| ||| || |||||| ||| Sbjct 1596725 TTTGCCTCCATCTTCTGGATGAAGAAACGCGGTCTCATGCCTGGCTTAACCTTCTCCAAT 1596666 Query 65188 GAACTTATTTCCCGAGATGAGGG 65210 || || ||| ||| |||||||| Sbjct 1596665 GAGCTCATTAGCCGTGATGAGGG 1596643 >seq41 Length=397776 Score = 96.9 bits (106), Expect = 4e-15 Identities = 322/495 (65%), Gaps = 11/495 (2%) Strand=Plus/Minus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAG 175251 ||||||| ||| || |||| || || || || || ||| |||| | || |||||| Sbjct 352317 GATGTTGCGGGAATGGACGAGGCGAAGGAGGAGATTATGGAGTTTGTTAAATTCCTCAAG 352258 Query 175252 CAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGT 175311 | || | | |||| || ||||| ||||| || || |||||| ||||| | || Sbjct 352257 GAGCCGGCTAAATATGAGCGATTGGGTGCAAAGATTCCGCGTGGCGCCATTCTCTCCGGG 352198 Query 175312 AAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCA 175371 |||||| || || || || ||| |||| ||||| ||||| || | || || Sbjct 352197 CCGCCAGGAACAGGCAAAACGCTCATCGCAAAAGCCACTGCGGGGGAGGCCTCGGTTCCT 352138 Query 175372 TTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431 ||| | | ||||| | | | ||||| ||||||||||| || || || | ||| Sbjct 352137 TTCCTATCGGTCTCTGGCTCCGAGTTTGTCGAGATGTTTGTCGGCGTCGGATCTTCAAGA 352078 Query 175432 GTTCGCGATCTCTTTGAAATCGCCCGCGAA-AATCAACCATGTATTGTCTTCATTGATGA 175490 || ||||||||||| | ||| || ||| | ||||| || ||||| |||| || Sbjct 352077 GTACGCGATCTCTTCG-CTTCGGCCAAGAAGCACGCTCCATGCATCATCTTCGTTGACGA 352019 Query 175491 GATTGATGCGGTGGGCAAGCAACG---CAGCGCTGGTGGTATGCCAGCAAATGACGAGAG 175547 || || || | || ||| || | | || | | | ||| |||||| | Sbjct 352018 AATCGACGCCATTGGAAAGTCCCGGTCGAAAGGGGGAAATTTCGGGGGAAACGACGAGCG 351959 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT---TGACAATGAGACTGG 175604 |||| ||| | ||||||||||| ||||||||||| || | |||||| || Sbjct 351958 AGAATCAACTCTCAATCAACTACTGGTGGAGATGGATGGATTCGGTACCAATGA-AC--A 351902 Query 175605 CATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCC 175664 ||| ||||| | || | || ||||| ||| | || ||| ||| ||| | || || Sbjct 351901 CATCGTGGTCTTGGCTGGAACCAATCGGCCTGATGTGCTCGATCCCGCTCTCATGCGTCC 351842 Query 175665 GGGTCGTTTTGATCG 175679 ||||| || ||||| Sbjct 351841 AGGTCGATTCGATCG 351827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567318121280