Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 seq1 89.7 8e-13 seq18 84.2 3e-11 >seq5 Length=1591901 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || || || || ||||| || Sbjct 947747 ATGCAGATCTTTGTCAAGACGTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCATCC 947688 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||||||| || || || ||||||||||| || ||||| || || Sbjct 947687 GACACTATTGACAACGTGAAAGCGAAGATCCAGGATAAAGAAGGGATTCCTCCCGATCAG 947628 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || |||||||| ||||| | || || |||||||| ||| Sbjct 947627 CAACGCCTTATTTTTGCTGGAAAGCAGCTAGAAGACGGACGTACATTGTCAGATTACAAT 947568 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| || |||||| Sbjct 947567 ATCCAGAAAGAGAGCACCCTTCAT 947544 >seq1 Length=2076502 Score = 89.7 bits (98), Expect = 8e-13 Identities = 191/285 (67%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 18421 ATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGC 18480 ||| || || ||||||||||| | | |||||| | || || || ||| ||||||| Sbjct 1596885 ATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCATCAT 1596944 Query 18481 TATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTC 18540 ||||| || | ||| || | | |||||||| |||| ||| | |||| | ||| Sbjct 1596945 AATCTGGAACCCATAGAAACACCGAGCCTCGGCGACCTGAACTTCGTTGGAAAAGCGTTC 1597004 Query 18541 TACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAAT 18600 | |||||||||||| ||||| || || | | || || || || | || | || Sbjct 1597005 GAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGAGAGAT 1597064 Query 18601 GAAATGTTTTTCATTATCCTT---GAGATTGTTCCATTCATCTATATCTTTTGATAGATC 18657 ||| || || || || || | | |||||||| || | | ||| || || || || Sbjct 1597065 GAAGTGGCGCTCGTTGTCGTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAGAGGTC 1597124 Query 18658 AACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 | ||| |||| |||||| || || | ||| |||| || ||||| Sbjct 1597125 CATTTCCTCCGCTGTCCAGAACGAAGCTTCAGCCTTCTTATACAT 1597169 >seq18 Length=860724 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||| ||| | |||||||| || || || | |||||||| || Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || || || || || ||||| ||||| || ||| Sbjct 789393 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAA 789452 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| |||||||| || |||||| | ||| | || || || ||| Sbjct 789453 CAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 789512 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 789513 ATCCAGAAGGAGTCCACACTTCAT 789536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869200589600