Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq23 113 6e-19 seq1 98.7 1e-14 seq5 96.9 4e-14 >seq23 Length=668295 Score = 113 bits (124), Expect = 6e-19 Identities = 205/295 (69%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 1852028 TCGGGATCGTCGAGGC---CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTC 1852084 ||||| |||||||| ||||||||||| || ||| || | ||| ||||||| Sbjct 57975 TCGGGCGCGTCGAGGAAGTCGATCTTGGAGTTGGGGTCGGAGGAGGACATTTTGCCGC-- 57918 Query 1852085 TCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACC 1852144 ||| |||||| || || | | ||| | ||||| ||| || || ||||||||| Sbjct 57917 -CGGCGAGGCCGGGAACCATGGTGTTCATGAGGTGCGCGCGTTTGCGGTAGCCGAGGCGG 57859 Query 1852145 GGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCG 1852204 || |||| | |||||||| || || |||||||||||| |||||||| ||| | Sbjct 57858 GGGAGGTAGAGTTCCGCAAAGGTGAAGATTTTGCGCTGGTCGATGCCGCCAAATTGGAAG 57799 Query 1852205 TCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGC-GGGTAGAGCACGTTGCTCAG 1852263 ||| ||||| | || ||||||||||| || | || | |||||||| | ||| || Sbjct 57798 TCGCACTCGAGATACTCTTCGTCGAGGGCTTGGA-GACCGGGGTAGAGGAGCCCGCTGAG 57740 Query 1852264 GAGCGGGTTGCGGTCCATCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGC 1852316 ||| ||| | | | |||||| || | ||| |||||| |||||| ||||| Sbjct 57739 GAGGGGGCTCTCGACTTGCTTGACGACTTCGGCGCCGGCCTTCTTTGCGTCGTGC 57685 >seq1 Length=2076502 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767 ||| ||| |||||| ||||| ||||| |||| ||| ||||||| ||||| | ||| Sbjct 1596288 CACCCGCTTCTCGAAGAAGTTAGTCTTCCCCTGGAGAGAGATCATGTCCATGAAGTCGAA 1596347 Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827 ||| || | | |||||| ||| || || || | | || || |||||||| || Sbjct 1596348 CGGATTTGTTTTGTTGTAGACCTTCTCATTCCCCAGTGCGACTAGGAGACGGTCGGCAAC 1596407 Query 868828 AAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAG 868884 ||||| || ||||||||||| | | | || |||||||| |||||| ||| ||||| Sbjct 1596408 GAACTCAATATACTGGCACATCAAGTCAGCATTCATGCCAATGAGCTTCACTGGCAG 1596464 Score = 98.7 bits (108), Expect = 1e-14 Identities = 199/289 (69%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| || || ||||| | |||||| ||| | |||||| ||||||| ||||||||| Sbjct 1598825 CCTTCATCCCGGCTGATGAGTTCGTTCGAAAATGTGAGGCCAGGCATGAAACCGCGCTTC 1598766 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||| || || | ||| || |||||||| || || || || || || ||| Sbjct 1598765 TTCATCCAGAATATTGAAGCGAACGATCCTGAGAAAAATATACCTTCCACAGCAGCGAAG 1598706 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT-TG--ATCCACTTCATCGCC 869356 ||| || | || ||||| ||||| || ||||| || |||||| | | |||| Sbjct 1598705 GCGACAAGTCTTTCCGCAAA--CGTCGA----CTGCTTGTCTGCTATCCACCTGAGCGCC 1598652 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTT 869415 || |||||||| | | | || || | || || || ||| ||| ||| | || | Sbjct 1598651 CAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTCAATAGCGTCAAACAGGAGAGTTC-G 1598593 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 ||| |||| || ||| |||||| || || || | ||| ||||||||| Sbjct 1598592 CTCGTCCGGATCTCTGATATAGGTATCAATGAGCAACGAGTAGGTCTCC 1598544 >seq5 Length=1591901 Score = 96.9 bits (106), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 || ||||| || ||||||||||| |||||||| || | |||||||| ||||| | Sbjct 241876 ATTGGCGGAACTGTGACGTGCGTTATCCGCAACGTCCCCTCTGGCCTCGGAGAGCCTGTC 241817 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 ||||||||| |||| || | || || ||||| ||||| || ||||| || || |||| Sbjct 241816 TTTGACAAGTTCGAAGCTACCCTTGCGCACGCGATGCTATCAATCCCTGCTACGAAGGCT 241757 Query 19173 TTCGAGATTGG 19183 |||||||| || Sbjct 241756 TTCGAGATCGG 241746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107114088207002