Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 129 9e-24 seq23 116 6e-20 seq2 87.8 3e-11 >seq1 Length=2076502 Score = 129 bits (142), Expect = 9e-24 Identities = 205/290 (71%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 794379 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGAAA 794436 ||| |||||||| ||||| ||||| | ||| ||||||| | || || || ||||| Sbjct 1596681 GCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAG--GCAAATGATCCTGAGAAG 1596738 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| || || || ||||||||| | ||||| || ||||| ||||| | || | | Sbjct 1596739 AAGATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGT--CGAGTGTCGGT 1596796 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | |||||| | | ||||| || ||||| ||| | | | || | || || | | Sbjct 1596797 CAGCA-ATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCAACG 1596855 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 || || || | ||| |||| | | ||||||| ||| |||||||||||||| || Sbjct 1596856 GCATCGAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGGGAA 1596915 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||| |||||||||||||| || |||||||| ||||| || || Sbjct 1596916 TACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACA 1596965 Score = 122 bits (134), Expect = 1e-21 Identities = 226/327 (69%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || || ||||| | |||||| ||| |||||| ||||||| ||||||||| Sbjct 1598825 CCTTCATCCCGGCTGATGAGTTCGTTCGAAAATGTGAGGCCAGGCATGAAACCGCGCTTC 1598766 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| || || | | ||| || |||||||| || || || || || || ||| Sbjct 1598765 TTCATCCAGAATATTGAAGCGAACGATCCTGAGAAAAATATACCTTCCACAGCAGCGAAG 1598706 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || | || ||||| ||| | | | | || | |||||| | | |||||| Sbjct 1598705 GCGACAAGTCTTTCCGCAAA--CGTCGACTGCTTGTCTGCT-ATCCACCTGAGCGCCCAA 1598649 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTC 794579 || ||||| | | | || || | || || || ||| ||| ||| | || | ||| Sbjct 1598648 TCGGCCTTGCGCTTGATGGAAGGAATTGTTTCAATAGCGTCAAACAGGAGAGTTC-GCTC 1598590 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | |||| || ||| ||||| || ||||| | |||||||||||| ||||| | |||||| Sbjct 1598589 GTCCGGATCTCTGATATAGGTATCAATGAGCAACGAGTAGGTCTCCGAGTGTACGTTTTC 1598530 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || | | || || ||||| ||||| Sbjct 1598529 TATCATGGTTTGAAAACCATAGAAGCA 1598503 Score = 104 bits (114), Expect = 4e-16 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 793916 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 793975 ||| ||| |||||| ||||| ||||| |||| ||| ||||||| ||||| | ||| Sbjct 1596288 CACCCGCTTCTCGAAGAAGTTAGTCTTCCCCTGGAGAGAGATCATGTCCATGAAGTCGAA 1596347 Query 793976 CGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGAC 794035 ||| || | | |||| |||||| ||| || | | || || |||||||| || Sbjct 1596348 CGGATTTGTTTTGTTGTAGACCTTCTCATTCCCCAGTGCGACTAGGAGACGGTCGGCAAC 1596407 Query 794036 GAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAG 794092 ||| ||||| ||||||||||| | | | || |||||||| |||||| ||| ||||| Sbjct 1596408 GAACTCAATATACTGGCACATCAAGTCAGCATTCATGCCAATGAGCTTCACTGGCAG 1596464 >seq23 Length=668295 Score = 116 bits (128), Expect = 6e-20 Identities = 209/296 (71%), Gaps = 17/296 (6%) Strand=Plus/Minus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 || ||||||||| || ||| || | ||| |||||| | || |||||| || ||| Sbjct 57957 TCGATCTTGGAGTTGGGGTCGGAGGAGGACATTTTGCCGCC---GGCGAGGCCGGGAACC 57901 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCG---C 2411502 | | ||| | ||||| ||| ||||||||||| || || || || ||| | | | Sbjct 57900 ATGGTGTTCATGAGGTGCGCGCGTTTGCGGTAGCCGAG-GCGGG--GGAGGTAGAGTTCC 57844 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 ||||||| ||||| |||||||||||| |||||||| ||| |||| ||||| | | Sbjct 57843 GCAAAGGTGAAGATTTTGCGCTGGTCGATGCCGCCAAATTGGAAGTCGCACTCGAGATAC 57784 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGC-GGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTC 2411621 | ||||||||||| || | || | ||||||| ||| |||||| | ||| | | | Sbjct 57783 TCTTCGTCGAGGGCTTGGA-GACCGGGGTAGAGGAGCCCGCTGAGGAGGGGGCTCTCGAC 57725 Query 2411622 CATCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGC-CG---ACGGTCACGC 2411671 |||||| || | |||| |||||| |||||| ||||| || |||||| ||| Sbjct 57724 TTGCTTGACGACTTCGGCGCCGGCCTTCTTTGCGTCGTGCTCGGACACGGTCGCGC 57669 >seq2 Length=1877779 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || || ||| |||| || |||| ||||| |||||||| ||||| | ||| | ||| | | Sbjct 655311 GCTTCAGTGGCGATACGCTCGAAGATGTCATTGACAAAGGAGTTGAGGATAGCCATGGCT 655370 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| ||| |||||||||||||| | ||| Sbjct 655371 TTGTTGGAGATGCCAGTGTCCGGGTGCACCTGCTTCAACAC 655411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916213849384334