Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5 150 4e-31 seq18 105 1e-17 >seq5 Length=1591901 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 |||||||| ||||| ||||| || | | | ||||||||||| || ||||||||||| Sbjct 947557 TCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTGCTTTCCAGCAAAA 947616 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | ||| ||||| ||||| || ||||| ||||| || ||||| ||||| || || Sbjct 947617 ATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTTCGCTTTCACGTTG 947676 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| || || | || || ||||| || || |||||||| ||||||||||| ||| Sbjct 947677 TCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCGTCAACGTCTTGACA 947736 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 947737 AAGATCTGCAT 947747 >seq18 Length=860724 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || ||||| || ||||| ||||||||| | | || || || || || Sbjct 790040 TGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTGC 789981 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | || || || || || || || || || || ||||||||| Sbjct 789980 TTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATCTTT 789921 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || || | || || || | || || ||||| || || Sbjct 789920 GCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAGTA 789861 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 789860 AGCGTCTTCACGAAAATCTGCAT 789838 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || || | ||| || ||||| || ||||| ||||| ||||||| Sbjct 789333 TACCACCGCGCAAGCGAAGCACGAGGTGAAGCGTAGACTCCTTCTGAATATTGTAATCAG 789274 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | |||||||| || ||||| ||||| ||||| |||| |||||| || |||| Sbjct 789273 ATAGTGTGCGTCCGTCTTCAAGCTGTTTGCCAGCGAAGATCAGTCGTTGTTGGTCGGGAG 789214 Query 82702 GTAT 82705 | || Sbjct 789213 GGAT 789210 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 82605 AAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664 |||||||| || || ||||| || || || || || || | | ||||| || || Sbjct 790320 AAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAAGC 790261 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || ||||| ||||| | | || || || || || || |||||||| || || ||| Sbjct 790260 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATC 790201 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || || || || ||||||||||| | || || || | || |||||||| || Sbjct 790200 TTCGCCTTGACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCCA 790141 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || ||||| Sbjct 790140 GTGAGCGTTTTGACGAAAATTTGCAT 790115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823350623734