Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18 100 7e-16 seq5 91.5 3e-13 seq7 84.2 5e-11 >seq18 Length=860724 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | ||||| || || ||| Sbjct 789613 CAGATCTTCGTCAAGACACTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGAC 789672 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || ||| ||| Sbjct 789673 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAACAA 789732 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||||||||||||| | ||||| || |||| | | || |||||| || Sbjct 789733 CGTCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGGCGGACACTCTCAGACTACAACATC 789792 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || |||||||||||| | | ||||| Sbjct 789793 CAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTTCG 789830 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | |||||||||||| || ||||| ||||||| || ||||| | | ||| Sbjct 789830 CGAAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTC 789771 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || ||||| ||||||||||||||||| || || |||||||| Sbjct 789770 CGCCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTG 789727 >seq5 Length=1591901 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||| | || || || || ||||| ||||| || || || ||| Sbjct 947744 CAGATCTTTGTCAAGACGTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCATCCGAC 947685 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||| || || |||||||| ||| || || || Sbjct 947684 ACTATTGACAACGTGAAAGCGAA-GATCCAGGATAAAGAAGGGATTCCTCCCGATCAGCA 947626 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || ||||||||| | ||||| ||| | || ||| | |||||||| | Sbjct 947625 ACGCCTTATTTTTGCTGGAAAGCAGCTAGAAGACGGACGTACATTGTCAGATTACAATAT 947566 Query 206352 CCAGAAAGAGTCTACTCTTCACCT 206375 |||||||||| || ||||| || Sbjct 947565 CCAGAAAGAGAGCACCCTTCATCT 947542 >seq7 Length=1492718 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| |||| |||||||||||||||||| | || ||||| | ||| | |||| |||||| Sbjct 957444 CAATGACTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTTGCACTCTCTCCGACTACAAC 957503 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCT 206375 ||||||| ||||| ||||| ||||| Sbjct 957504 ATCCAGAAGGAGTCCACTCTCCACCT 957529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816166523826