Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-34 >seq1 Length=2076502 Score = 165 bits (182), Expect = 1e-34 Identities = 285/407 (70%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 |||| |||||||||| |||||| |||||||||||||| ||| || ||| |||||| | Sbjct 1597083 CGACAACGAGCGCCACTTCATCTCTCACGTCCTCGCCTTCTTT-GCTGCCTCCGATGGGA 1597025 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 | || ||||| || || |||||| || || || || | | ||||| || | Sbjct 1597024 TAGTCAATGAGAATTTGCTCGAACGCTTTTCCAACGAAGTTCAGGTCGCCGAGGCTCGGT 1596965 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || || ||||||||||| || |||||||||||||| || || || || ||||| | Sbjct 1596964 GTTTCTATGGGTTCCAGATTATGATGGAAAACATCCACTCCGAGACGTATTCCCTCCTCA 1596905 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 ||||||| ||| ||||||| | | |||| ||| | || || ||| | || || Sbjct 1596904 TCGACACTTACATCAAGGATGCTGCCGAGCGGGAGTATCTGTTCGATGCCGTTGAGACCA 1596845 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 | || | | | ||| ||||| || ||||| | | |||||| | | |||| Sbjct 1596844 TCCCTTGCATCAAGAAGAAGGCGGAATGGGCTCTCAGGTGGAT-TGCTGACCGACACTCG 1596786 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGG--C 1456225 || || ||||| || ||||| | ||||||||| || || || ||||| ||||| || | Sbjct 1596785 AC-TTTCGCCGAACGTCTCGTTGCCTTTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATC 1596727 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 | || | | ||||||| ||| | ||||| ||||| |||||||| || Sbjct 1596726 ATTTGC--CTCCATCTTCTGGATGAAGAAACGCGGTCTCATGCCTGG 1596682 Score = 140 bits (154), Expect = 5e-27 Identities = 303/443 (68%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 1455874 ACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTG 1455933 |||| || |||||||| || || || |||||||| ||| ||| ||||||||||| Sbjct 1598390 ACGAACGATATTTCATCTCTCATGTTCTGGCCTTTTT-CGCTGCCTCTGATGGCATCGTT 1598448 Query 1455934 GCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTT 1455993 ||| ||||| | | || ||| || ||||| || || | ||||| |||| || Sbjct 1598449 AACGAAAACCTCGTTGAACGGTTTTCCAACGAGGTTCAGGTGGCTGAGGCGCGTTGCTTC 1598508 Query 1455994 TACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGAC 1456053 || || || || | | || |||||| | ||||| || ||||||||| | || || || Sbjct 1598509 TATGGTTTTCAAACCATGATAGAAAACGTACACTCGGAGACCTACTCGTTGCTCATTGAT 1598568 Query 1456054 ACCTACGTCAAGGACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||||| ||| || |||| |||| | || | ||| ||| ||| || || || | || Sbjct 1598569 ACCTATATCAGAGATCCGGACGAG-CGAACTCTCCTGTTTGACGCTATTGAAACAATTCC 1598627 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT--CA-ACAAGGAGGGCCTCGA 1456169 || | | | |||||||| |||||| | | |||||| || ||||| || |||| Sbjct 1598628 TTCCATCAAGCGCAAGGCCGATTGGGCGCTCAGGTGGATAGCAGACAAGCAG----TCGA 1598683 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 | ||||| || | || |||| ||| || || || || || || |||||||| || Sbjct 1598684 C-GTTTGCGGAAAGACTTGTCGCCTTCGCTGCTGTGGAAGGTATATTTTTCTCAGGATCG 1598742 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAA 1456288 ||| | || || ||| | ||||||||||| ||||||| || | || ||| || Sbjct 1598743 TTCGCTTCAATATTCTGGATGAAGAAGCGCGGTTTCATGCCTGG-CCTCACATTTTCGAA 1598801 Query 1456289 CGAATTTATCAGTCGCGACGAAG 1456311 |||| | ||||| || || |||| Sbjct 1598802 CGAACTCATCAGCCGGGATGAAG 1598824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177781685737572