Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 168 9e-37 seq3 84.2 3e-11 >seq1 Length=2076502 Score = 168 bits (186), Expect = 9e-37 Identities = 382/568 (67%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| || || |||||||| || || || ||||| | || || | |||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 |||||||| |||||||| | ||| ||||| || | ||| ||||| | ||| || ||||| Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || || || || ||||| || || || || || |||||||| || | | | | | Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAACGTCGACTGC 1598676 Query 39788 TTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | ||||||| | | |||||||| || || ||| | |||| |||||||| Sbjct 1598675 TTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTCA 1598616 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 ||||| | ||| || | | || || |||| | | ||| ||||| || | || | Sbjct 1598615 ATAGCGTCAAACAGGAGAGTTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA-A 1598557 Query 39905 CTA-TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 | | || | || || || | |||||| ||| | ||||| || || || || | || Sbjct 1598556 CGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGCGC 1598497 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 |||| | || ||||| |||| | ||| | | ||||| || || || ||||| Sbjct 1598496 CTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCATC 1598437 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTC-ATCGGGTGTCAAT- 40081 | || || ||||| |||| ||||| || |||||| ||| ||| || | | | Sbjct 1598436 AGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAGT-TGAGTT 1598378 Query 40082 --TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 || |||||||| ||| || | || | ||||| ||| || || |||||||| || | Sbjct 1598377 TGTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGATG 1598318 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 ||| ||| | |||||||| | |||||| Sbjct 1598317 CCTGTGCTTGTTTGTACAGCTGCCATAT 1598290 Score = 138 bits (152), Expect = 2e-27 Identities = 373/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | ||| || || || ||| | ||||||||| | ||||| | || || || Sbjct 1596613 AACAGGAGGCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAATGAGCTCATTGGAG 1596672 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | |||||||| ||||| || || || | ||| || |||| ||||| ||||| Sbjct 1596673 AAGGTTAAGCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGGAGGCAAATGATCCT 1596732 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG--TAT 39785 || |||||||| ||||| || || ||||| ||||| || | || || || | | | | Sbjct 1596733 GAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGGCGAAAGTCGAGTGT 1596792 Query 39786 CATTATGTA-TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | | | | ||||| | | ||||| || || |||||||| | ||||| || || || Sbjct 1596793 CGGTCAGCAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGCAAGGGATGGTCTCA 1596852 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 | |||| || ||||| | || || ||| || | || || || || | || Sbjct 1596853 ACGGCATCGAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAGTGTCGATGAGGAGG 1596912 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||| | || || ||||||||||| ||| ||||| || || || ||||| | || Sbjct 1596913 GAATACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCATAGAAACACCGAGCC 1596972 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | | || || || |||| | ||| |||||| ||||| ||||| ||||| Sbjct 1596973 TCGGCGACCTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCATTGACTATCCCATCG 1597032 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---- 40080 || ||||| || || | || || || || | || | | || || Sbjct 1597033 GAGGCAGCAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGT-TGTCGTTAAGGCG 1597091 Query 40081 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 || |||||||| | | ||| || || | || | ||| || |||||||| ||||| || Sbjct 1597092 GTTGTTCCAGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTGTCCAGAACGAAGC 1597151 Query 40141 CTCTGCCTTTTTGTACATGTTCCATAT 40167 || ||||| || ||||| | ||| || Sbjct 1597152 TTCAGCCTTCTTATACATCTGCCAGAT 1597178 >seq3 Length=1723946 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || ||||| ||||||||||| || ||| || ||||| || | || ||||| ||||| Sbjct 704109 AAGAGATCCGGAATCCAAAGGGC-ATAGAAAAGATCCCTCGCTCGCACCTCTTCCTTTCC 704051 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||||| | ||||| | ||||| | || ||||| |||||||||||| | ||| || Sbjct 704050 ATGGTTTTTCCTCAGATCCAAGAACTCGAAAACATCAGCATGCCATGGTTCAATATAGAT 703991 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | | || || ||||| || || || || || | || | |||||| | || Sbjct 703990 GGCGAAGGCGCCAGGGCGTTTGTTGCCACCTTGGTCGACATAGCGAGCAGTGGCGTCGTA 703931 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 | | ||||| || | || ||||| || | ||| || ||||| Sbjct 703930 CGCGCGAAGCATTGGCACGATGCCATTTGAGTAACCGTTGGTTCC 703886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906172573840