Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 183 2e-41 >seq1 Length=2076502 Score = 183 bits (202), Expect = 2e-41 Identities = 367/541 (68%), Gaps = 16/541 (3%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 |||||||| |||||||| |||||||||| || |||||||| ||||| ||| | ||| || Sbjct 1598290 ATATGGCAGCTGTACAAACAAGCACAGGCATCTTTTTGGACTGCAGAGGAAATAGATCTG 1598349 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAA-AACCACAA-------GAAAAACATTTTA 43841 | | ||| | ||| ||| || | || || | ||| ||| | |||| | Sbjct 1598350 TCGCATGACCT----CAT-GGACTGGAACAACAAACTCAACTCGAACGAACGATATTTCA 1598404 Query 43842 TATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTA 43901 | ||| ||| |||| ||||| ||||| || || || || || ||||| | ||| Sbjct 1598405 TCTCTCATGTTCTGGCCTTTTTCGCTGCCTCTGATGGCATCGTTAACGAAAACCTCGTTG 1598464 Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961 |||||| | | || ||||| | | || || || || || ||||| ||||||| Sbjct 1598465 AACGGTTTTCCAACGAGGTTCAGGTGGCTGAGGCGCGTTGCTTCTATGGTTTTCAAACCA 1598524 Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 |||||||| | || ||||| | ||| | || || ||||| || |||| |||| Sbjct 1598525 TGATAGAAAACGTACACTCGGAGACCTACTCGTTGCTCATTGATACCTATATCAGAGATC 1598584 Query 44022 GGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAG 44081 | ||||| || ||||| | || || |||||| | ||| | || || | || | Sbjct 1598585 CGGACGAGCGAACTCTCCTGTTTGACGCTATTGAAACAATTCCTTCCATCAAGCGCAAGG 1598644 Query 44082 CAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCG 44138 | || ||||| || | |||||| || | || |||| ||| ||||||||| Sbjct 1598645 CCGATTGGGCGCTCAGGTGGATAGCAGACAAGCAGTCGACGTTTGCGGAAAGACTTGTCG 1598704 Query 44139 CGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAA 44198 | || || | ||||||||| || || || ||||||||||| || | ||||| ||| | | Sbjct 1598705 CCTTCGCTGCTGTGGAAGGTATATTTTTCTCAGGATCGTTCGCTTCAATATTCTGGATGA 1598764 Query 44199 AGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258 |||| || ||||| |||||||| | || ||||| || || | || || || ||||||| Sbjct 1598765 AGAAGCGCGGTTTCATGCCTGGCCTCACATTTTCGAACGAACTCATCAGCCGGGATGAAG 1598824 Query 44259 G 44259 | Sbjct 1598825 G 1598825 Score = 168 bits (186), Expect = 5e-37 Identities = 299/434 (69%), Gaps = 13/434 (3%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| ||| |||||||||||||| |||||| | || ||| | | Sbjct 1597049 GCCTTCTTTGCTGCCTCCGATGGGATAGTCAATGAGAATTTGCTCGAACGCTTTTCCAAC 1596990 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 |||||||| | | || || || ||||| |||||||| || ||| || ||||| || Sbjct 1596989 GAAGTTCAGGTCGCCGAGGCTCGGTGTTTCTATGGGTTCCAGATTATGATGGAAAACATC 1596930 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA---GAAG 44032 || || || | ||| || || || || || |||||||| |||| ||| | || Sbjct 1596929 CACTCCGAGACGTATTCCCTCCTCATCGACACTTACATCAAGGATGCTGCCGAGCGGGAG 1596870 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 ||| |||| |||| | || || | ||| || || | || || || ||||| Sbjct 1596869 TATC---TGTTCGATGCCGTTGAGACCATCCCTTGCATCAAGAAGAAGGCGGAATGGGCT 1596813 Query 44093 CTTAAATGGAT-----AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 || | ||||| | || || |||| | ||||| || || || ||||| | Sbjct 1596812 CTCAGGTGGATTGCTGACCGACACTCGA--CTTTCGCCGAACGTCTCGTTGCCTTTGCCG 1596755 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAG 44207 ||| ||||| || ||||| |||||||| ||||| |||| || ||| | |||||||| | Sbjct 1596754 CTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGAAGAAACGCG 1596695 Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATT 44267 || | |||||||| || || || || |||||| | || || |||||||| ||| | ||| Sbjct 1596694 GTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAGGGCATGCATA 1596635 Query 44268 GCGATTTTGCTTGC 44281 ||||||||| ||| Sbjct 1596634 CCGATTTTGCATGC 1596621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454517737530