Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 140 4e-28 seq41 91.5 2e-13 >seq1 Length=2076502 Score = 140 bits (154), Expect = 4e-28 Identities = 338/503 (67%), Gaps = 9/503 (2%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| ||| ||| || ||||| |||||| || || ||||||||||| || ||| Sbjct 1596643 CCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTTC 1596702 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||| ||| | || | | ||||| || |||||||||||||| || ||| ||||| Sbjct 1596703 TTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAAG 1596762 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCCATTT 122855 |||| || ||||||||||| | |||| | | || ||| ||| | | ||||||| Sbjct 1596763 GCAACGAGACGTTCGGCGAAAG-TCGAGTGTCGGTCAGCAATCCACCTGAGAGCCCATTC 1596821 Query 122856 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGA 122915 ||||||||||| || || || | || | | ||| || || | | || | || | Sbjct 1596822 CGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGGC 1596881 Query 122916 TCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTT-CAT 122974 ||||||| ||||| |||| || | ||||| || ||| || | ||| ||| Sbjct 1596882 AGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCAT 1596941 Query 122975 TATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAAT 123034 || | || | | ||||| | || || ||| | |||||| || | | |||| Sbjct 1596942 CATAATCTGGA-ACCCATAGAAACACCGAGCCTCGGCGACCTGAACTTCGT-TGGAAAAG 1596999 Query 123035 TGTTATTG-ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTAC 123093 ||| | | ||||||| || || |||||||| |||||||||| || |||| || Sbjct 1597000 CGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGA 1597059 Query 123094 TTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTCGTCAAGATCTTTGGAC 123150 ||||| | || || || || | || | |||||||||| |||||| || || Sbjct 1597060 GAGATGAAGTGGCGCTCGTTGTCGTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAG 1597119 Query 123151 AAATCAACTTCTTCCGCAGTCCA 123173 | || | ||| ||||| ||||| Sbjct 1597120 AGGTCCATTTCCTCCGCTGTCCA 1597142 >seq41 Length=397776 Score = 91.5 bits (100), Expect = 2e-13 Identities = 321/495 (65%), Gaps = 11/495 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 ||||| || ||||| || || | ||| ||| ||| || | ||| ||||| || | Sbjct 351827 CGATCGAATCGACCTGGACGCATGAGAGCGGGATCGAGCACATCAGGCCGATTGGTTCCA 351886 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCTCGGTGAGTAATTGA 11566 || | ||||| ||| || |||||| | || ||||||||||| |||| |||| Sbjct 351887 GCCAAGACCACGATGT--GT-TCATTGGTACCGAATCCATCCATCTCCACCAGTAGTTGA 351943 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTG---CGTTGCTTG 11623 || | ||| ||||| ||| || ||| | | | || | | || ||| Sbjct 351944 TTGAGAGTTGATTCTCGCTCGTCGTTTCCCCCGAAATTTCCCCCTTTCGACCGGGACTTT 352003 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATT-TTCGCGGGCGATTTC 11682 || | || || || || |||| ||||| || ||||| | ||| || ||| | Sbjct 352004 CCAATGGCGTCGATTTCGTCAACGAAGATGATGCATGGAGCGTGCTTCTTGGCCGAAG-C 352062 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||||||||||| || ||| | || || || ||||||||||| ||||| | | | | Sbjct 352063 GAAGAGATCGCGTACTCTTGAAGATCCGACGCCGACAAACATCTCGACAAACTCGGAGCC 352122 Query 11743 AGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 |||| | | ||| || || | || ||||| ||||| |||| ||| || || Sbjct 352123 AGAGACCGATAGGAAAGGAACCGAGGCCTCCCCCGCAGTGGCTTTTGCGATGAGCGTTTT 352182 Query 11803 TCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAA 11862 || || |||||| || | ||||| |||||| || || ||||| ||||| || Sbjct 352183 GCCTGTTCCTGGCGGCCCGGAGAGAATGGCGCCACGCGGAATCTTTGCACCCAATCGCTC 352242 Query 11863 ATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTC 11922 |||| | | || | |||||| || | |||| ||| || || || || ||| |||| Sbjct 352243 ATATTTAGCCGGCTCCTTGAGGAATTTAACAAACTCCATAATCTCCTCCTTCGCCTCGTC 352302 Query 11923 AATCCCCTCAACATC 11937 || ||| ||||||| Sbjct 352303 CATTCCCGCAACATC 352317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029597777600