Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 >seq1 Length=2076502 Score = 176 bits (194), Expect = 6e-39 Identities = 346/503 (69%), Gaps = 9/503 (2%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| |||||| ||||| ||||| |||||| | || ||||||||||| || ||| Sbjct 1596643 CCCTCATCACGGCTAATGAGCTCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTTC 1596702 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||| |||||| || | |||||| || ||||||||||| || || ||| || || Sbjct 1596703 TTCATCCAGAAGATGGAGGCAAATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAAG 1596762 Query 130154 GCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212 |||| |||||| || || |||| | | | | | | ||| |||| | | ||||| | Sbjct 1596763 GCAACGAGACGTTCGGCGAAAGTCGAGTGTCGGT-CAGCAATCCACCTGAGAGCCCATTC 1596821 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272 |||||| |||| ||| || |||| ||||| | || || || || | || | || | Sbjct 1596822 CGCCTTCTTCTTGATGCAAGGGATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGGC 1596881 Query 130273 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTT-CAT 130331 | ||| |||||||| | || ||||| ||||| || ||| |||| ||| ||| Sbjct 1596882 AGCATCCTTGATGTAAGTGTCGATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCAT 1596941 Query 130332 TATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCAAAAT 130391 || ||| || | |||||| | || || ||| | ||| || || | || |||| Sbjct 1596942 CAT-AATCTGGAACCCATAGAAACACCGAGCCTCGGCGACCTGAACTTCGT-TGGAAAAG 1596999 Query 130392 TGTTATTG-ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATAC 130450 ||| | | ||||||| || || |||||||| ||||||| || || |||| | Sbjct 1597000 CGTTCGAGCAAATTCTCATTGACTATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGA 1597059 Query 130451 TTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTCGAG 130507 ||||| | | || || ||||| | || | |||||||||| ||||||||||||| Sbjct 1597060 GAGATGAAGTGGCGCTCGTTGTCGTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAG 1597119 Query 130508 AGATCTACCTCCTCCGCAGTCCA 130530 || || | |||||||| ||||| Sbjct 1597120 AGGTCCATTTCCTCCGCTGTCCA 1597142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432834485360