Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 170 6e-37 seq18 165 2e-35 seq2 145 2e-29 seq11 107 6e-18 >seq5 Length=1591901 Score = 170 bits (188), Expect = 6e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||||||||| ||||| || ||||||||||| || || | || || || || Sbjct 947764 AGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTACGGCCGTCC 947823 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| |||||||| ||||| || ||||| |||||||| ||| Sbjct 947824 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCTTCTTTGTCC 947883 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || ||||||||||| | ||| |||| ||||| || || || | ||| Sbjct 947884 TGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAACCTCGAGAGTGATCGTC 947943 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| || || |||||||| Sbjct 947944 TTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 |||||||| || |||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 947542 AGATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGC 947601 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || ||||||||||| || || ||||||||||| |||||||| |||||||||||||| || Sbjct 947602 TGCTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATC 947661 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || ||||| || || ||||| | || |||| || || || | || | ||||| || Sbjct 947662 TTCGCTTTCACGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCC 947721 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || || ||||| |||||||| Sbjct 947722 GTCAACGTCTTGACAAAGATCTGCAT 947747 Score = 107 bits (118), Expect = 6e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| ||||| || ||||||||||| ||||| || |||||||| | ||| || || || Sbjct 947992 AGAACGAGATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGAAAGTGTGCGGCCGTCC 948051 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTC 140634 || || || || ||||| ||||| ||||||||||| |||||||| |||| Sbjct 948052 TCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGGATTC 948100 >seq18 Length=860724 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||| ||||| ||||| || ||||| ||||| ||||||| || |||||||| ||||| Sbjct 790043 AGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGC 789984 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||||||||| ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 789983 TGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATC 789924 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || || || | || || | ||||| ||||| |||| ||||| || Sbjct 789923 TTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCA 789864 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || ||||||||||| Sbjct 789863 GTAAGCGTCTTCACGAAAATCTGCAT 789838 >seq2 Length=1877779 Score = 145 bits (160), Expect = 2e-29 Identities = 275/401 (69%), Gaps = 3/401 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||||||||| || || ||| || | | || |||||||| | || || | || | Sbjct 371357 CCCGAAGAAATCTCCTCCATGATTCTGCTCAAGATGAAGGAGACGGCAGAGTCTTACCTG 371416 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||| || || | | || ||| | || || || || || || || ||| | |||||| Sbjct 371417 GGTACCACGGTGAACAACGCAGTTGTCACCGTCCCCGCGTACTTCAACGATTCTCAGCGT 371476 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || ||||| | || | || | || |||| | || || || || Sbjct 371477 CAAGCCACCAAGGACGCTGGAACGATCTCCGGCATGAACATTCTCCGTATCATCAACGAG 371536 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTAT 349770 || || || ||||| ||||| || || || ||||| | | || | || || | Sbjct 371537 CCTACCGCCGCAGCTATTGCCTACGGTCTCGATAAGAAG-GTCTCTGGCGAGCGGAACGT 371595 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 ||||| |||||| | ||||| || || |||||||| || || || || |||| ||||| Sbjct 371596 CCTTATCTTTGATCTGGGTGGAGGAACCTTTGATGTCTCTCTCCTGACCATTGAGGAGGG 371655 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || || |||||||| ||||||||||| || | |||||||||||||| || || Sbjct 371656 TATCTTCGAGGTCAAAGCAACCGCTGGTGATACCCACTTGGGTGGAGAAGATTTCGACAA 371715 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 |||||||| || || || | ||||| ||||| |||| Sbjct 371716 CCGTCTCGTCAATCACTTCATTCAGGAATTCAAGCG-CAAG 371755 >seq11 Length=1246474 Score = 107 bits (118), Expect = 6e-18 Identities = 192/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || ||| || || || || || || | || || | || || || ||||||||| ||| Sbjct 934427 TAGTGTCCCTGCATACTTCAACGACTCTCAACGCTTGGCCACCAAGGATGCTGGCGCCAT 934368 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | |||| || | || || |||||||||||||| || || ||||| || || Sbjct 934367 TGCTGGCCTGGATGTCCTCCGTATCATCAATGAACCCACTGCCGCTGCCATTGCGTACGG 934308 Query 349738 GCTTGAT--AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||| || | || || || || | || || || ||||| ||||| || Sbjct 934307 TCTCGATCGTCAAACAAAAAC--TGAGAAGAACGTCCTGATCTTCGATTTGGGTGGAGGA 934250 Query 349796 ACTTTTGATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 || |||||||| || || || |||| | || ||| |||||| || || || ||||| Sbjct 934249 ACCTTTGATGTGTCCCTTCTCAACATCAGCGGA-GGAGTTTTTGCCGTCAAGGCCACTGC 934191 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 |||||||| || || ||||| |||||||| || || Sbjct 934190 CGGTGATACCCACCTGGGTGGTGAAGATTTCGACAA 934155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248459255718