Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 145 8e-30 seq3 113 5e-20 >seq1 Length=2076502 Score = 145 bits (160), Expect = 8e-30 Identities = 367/551 (67%), Gaps = 18/551 (3%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||||||||| || | ||| |||||| | | ||||| || |||||| | || | Sbjct 1597168 TGTATAAGAAGGCTGAAGCTTCGTTCTGGACAGCGGAGGAAATGGACCTCTCGAAGGATC 1597109 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGAC---GAGCAGCATTTCATCAAGATGGTCCTGG 59709 | | || ||| |||| | | | ||||| |||| || |||||| ||||| | Sbjct 1597108 TTCACGACTGGAACAACCGCCTTAACGACAACGAGCGCCACTTCATCTCTCACGTCCTCG 1597049 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAAC--TTTTCCAA 59767 ||||||| || || ||||| || || | || ||| | | |||| |||||||| Sbjct 1597048 CCTTCTTTGCTGCCTCCGATGGGATAGTCAATGAGAATTTGCTC--GAACGCTTTTCCAA 1596991 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTAT 59827 || || ||| | |||||||| |||| ||||| | || ||| | | || || Sbjct 1596990 CGAAGTTCAGGTCGCCGAGGCTCGGTGTTTCTATGGGTTCCAGATTATGATGGAAAACAT 1596931 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||||||||||||||| || ||| | ||||| | | |||||||| | | ||| || Sbjct 1596930 CCACTCCGAGACGTATTCCCTCCTCATCGACACTTACATCAAGGATGCTGCCGAGCGGGA 1596871 Query 59888 TGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 ||||||| |||| | |||| | |||| ||| | || | || || |||||||| Sbjct 1596870 GTATCTGTTCGATGCCGTTGAGACCATCCCTTGCA-TCAAGAAGAAGGCGGAATGGGCTC 1596812 Query 59947 TGCAGTGGATGAGTCCTG---GA---GCATCATTTGCACAACGTCTCATAGCTTTTGCAT 60000 | |||||| | ||| || | | || || |||||||| | || ||||| Sbjct 1596811 TCAGGTGGAT---TGCTGACCGACACTCGACTTTCGCCGAACGTCTCGTTGCCTTTGCCG 1596755 Query 60001 GCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 || ||||| ||||||||||| || || || | || |||||| | || || || | Sbjct 1596754 CTGTTGAAGGTATCTTCTTCTCAGGATCATTTGCCTCCATCTTCTGGATGAAGAAACGCG 1596695 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120 | |||||||| ||| | | |||||||| ||||| ||| ||| || |||||| | ||| Sbjct 1596694 GTCTCATGCCTGGCTTAACCTTCTCCAATGAGCTCATTAGCCGTGATGAGGGCATGCATA 1596635 Query 60121 AGGAGTTTGCA 60131 || |||||| Sbjct 1596634 CCGATTTTGCA 1596624 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/188 (73%), Gaps = 11/188 (6%) Strand=Plus/Plus Query 60245 ACTCATAGGTATGGACGCTGGAGAA-ATGACGCAGTACATTCAGTTTGTCGCGGACCGCC 60303 |||||| |||||| | || | || ||| |||||||| | || || || ||||| | Sbjct 1599014 ACTCATCGGTATGAATGC-GAAGCTCATGTGCCAGTACATCGAATTCGTTGCTGACCGAC 1599072 Query 60304 TCATGG---CCCAGTTTGGAGAAGGACCAAT-TTACGGCGTGAATAACCCTTTCGACTGG 60359 || ||| ||| |||| || || ||| ||||||| | |||||||| |||| Sbjct 1599073 TCCTGGTGTCCC---TTGGC-AATGAAAAATGTTACGGCTCACAAAACCCTTTTGACTTC 1599128 Query 60360 ATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||| | ||||| ||| |||| ||||||||||| ||||||||||||||| ||| ||| Sbjct 1599129 ATGGACATGATCTCCTTGCAAGGAAAGACCAACTTTTTTGAGAAGCGGGTCTCGGAATAT 1599188 Query 60420 TC-AAAGC 60426 || ||||| Sbjct 1599189 TCGAAAGC 1599196 >seq3 Length=1723946 Score = 113 bits (124), Expect = 5e-20 Identities = 147/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 79693 TTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA-GCT 79751 || || || || || ||||| ||||| ||||| |||||||| |||||||||||| | Sbjct 703750 TTCAGGGTGTCATAAATGCCTTCGATAGAGTCCTCCTTCATGCAGACCAGGAAGCACGAG 703691 Query 79752 CGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG-AAGA 79810 | | | ||||||| | ||||| |||||||||||||| |||| |||||||||| || | Sbjct 703690 CTAAGT-TGTGGGTGGGGTGTACCTGCGTTGAAGAGGGTAGGCGACGCGTGCGTGAAATA 703632 Query 79811 ACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGC 79870 || || || ||| |||| ||| || || | ||||| | |||| || || |||| Sbjct 703631 ACGTTCGG-ACATGAGATTGTAAGTTTCAATAACGCGATCCATGTCGGAACCATGAATGC 703573 Query 79871 CGACCGCGACGCGCATGA 79888 | || ||||| ||||||| Sbjct 703572 CAACGGCGACACGCATGA 703555 Score = 111 bits (122), Expect = 2e-19 Identities = 283/427 (66%), Gaps = 8/427 (2%) Strand=Plus/Plus Query 19843 CAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCAT 19902 ||| || ||||| |||| | || | ||||||||||| ||||| || || |||||||| Sbjct 704434 CAAATCCAATCAACAGAATTTGGGTACCATCAAGTCGTCGAACCTTTGCACAGAAATCAT 704493 Query 19903 GGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGAC 19962 ||| ||| ||| || || || ||||| || ||||| || || ||| || || || Sbjct 704494 CGAGTACTCCTCGCCCGAGGAAACCGCCGTCTGCAATCTCGCCTCGCTGGCTCTCCCTAC 704553 Query 19963 TTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCAC 20022 ||| |||| | | | ||| || ||| | |||| || ||| |||||| | Sbjct 704554 CTTCATCAAAAACGGCGTATACGATTTCCAGAAACTCCACGATGTCACCAAGGTCGTGGC 704613 Query 20023 GCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGA---CCGAGGCGGCGCGCAA 20079 | |||||||| ||| ||||||| |||| || || | ||||||| ||| Sbjct 704614 GTTCAATCTGAACCGCATCATCGACGTTAACTACTATCCCATCCCCGAGGCTCGTCGC-- 704671 Query 20080 GTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCAT 20139 |||||| | || |||||||| |||| ||||| || || || || |||||| ||||| Sbjct 704672 -TCGAATTTCCGTCACCGGCCCATCGGCATCGGTGTGCAAGGTCTCGCCGACACCTTCAT 704730 Query 20140 GATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGA 20199 | || | | | |||||| ||| || ||||||||| || ||||| Sbjct 704731 GGCTCTTCACATGCCGTTCGACTCCCCCGCTGCCAAGGAGCTCAACGTTCAGATATTCGA 704790 Query 20200 GGCCGTGTACCACGCGGCCCTCCTGG-AATCGTGCGAACTCGCCAAAGAGGACGGCCCGT 20258 | || | ||||||| || ||| || | ||| || | || || |||||||||| | Sbjct 704791 GACCATCTACCACGGTGCTCTCGAGGCTAGCGT-TGAGATGGCTGAAAAGGACGGCCCCT 704849 Query 20259 ACGAGAC 20265 | ||||| Sbjct 704850 ATGAGAC 704856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/297 (68%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 ||||||| ||||| || || || || ||||| |||| || ||||| || | || Sbjct 704731 CATGAAGGTGTCGGCGAGACCTTGCACACCGATGCCGATGGGCCGGTGACGGAAATT--- 704675 Query 78924 CTTTCGGGCCGCCTCGG---TCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980 | || ||||||| | || || |||| ||||||| ||||||||| || Sbjct 704674 CGAGCGACGAGCCTCGGGGATGGGATAGTAGTTAACGTCGATGATGCGGTTCAGATTGAA 704615 Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAA-ATGATTTCCTTTGATGA 79039 || |||||| || || |||| | ||| |||||| | | | | |||||||| Sbjct 704614 CGCCACGACCTTGGTGACATCGTGGAGTTTCTGGAAATCGTATACGCCGTT-TTTGATGA 704556 Query 79040 AAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC-C 79098 | || || || |||||| || || ||||| ||||| || || || |||| || | | Sbjct 704555 AGGTAGGGAGAGCCAGCGAGGCGAGATTGCAGACGGCGGTTTCCTC-GGGCGAGGAGTAC 704497 Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 ||||||||||||||||| | || |||||||||||||| || | |||| || ||| Sbjct 704496 TCGATGATTTCTGTGCAAAGGTTCGACGACTTGATGGTACCCAAATTCTGTTGATTG 704440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522701892640