Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 188 8e-43 seq18 178 1e-39 seq1 105 8e-18 seq29 95.1 1e-14 seq8 93.3 5e-14 seq33 84.2 2e-11 seq3 84.2 2e-11 >seq5 Length=1591901 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || ||||| || ||||| || ||||| |||||||||||| Sbjct 947975 ATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATCACTCTCGAGGTTGAGTCATCC 947916 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || ||||||||||| || || ||||| || || || Sbjct 947915 GATACCATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGATCAA 947856 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| |||||||| | ||||| || | ||||||||| Sbjct 947855 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCCGACTATAAT 947796 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||||||||| ||| | ||||| ||||| || Sbjct 947795 ATTCAGAAGGAGTCGACTCTTCATCTCGTCCTTCGTCTGCGCGGAGG 947749 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||| | || |||||||| || || | ||||| |||||| Sbjct 947747 ATGCAGATCTTTGTCAAGACGTTGACGGGCAAGACCATCACGTTGGAGGTCGAGTCATCC 947688 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || |||| || || || ||||| || || || |||||||| || ||| Sbjct 947687 GACACTATTGACAACGTGAAAGCGAAGATCCAGGATAAAGAAGGGATTCCTCCCGATCAG 947628 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || ||||||||||| ||||| || || || | ||||| | |||| || ||| Sbjct 947627 CAACGCCTTATTTTTGCTGGAAAGCAGCTAGAAGACGGACGTACATTGTCAGATTACAAT 947568 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| || || ||| |||||||| Sbjct 947567 ATCCAGAAAGAGAGCACCCTTCATCT 947542 >seq18 Length=860724 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||||||||| || ||||||||||| |||||||||||||| Sbjct 789838 ATGCAGATTTTCGTGAAGACGCTTACTGGGAAGACTATTACCCTTGAGGTTGAGTCGTCG 789897 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || ||||||||||| ||||| ||||| || |||||| Sbjct 789898 GACACTATCGACAACGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCGCCCGACCAG 789957 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||||| || || ||| | |||||||| Sbjct 789958 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTCTATCTGACTATAAC 790017 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| |||||||| ||||| Sbjct 790018 ATTCAGAAGGAGTCCACTCTCCATCT 790043 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || || || |||||| Sbjct 789610 ATGCAGATCTTCGTCAAGACACTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCG 789669 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| || || || ||||| Sbjct 789670 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAA 789729 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || || ||||| ||||| || | || || || ||||||| || Sbjct 789730 CAACGTCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGGCGGACACTCTCAGACTACAAC 789789 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | |||||||| ||||| Sbjct 789790 ATCCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTTCGTGGTGG 789836 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || || || ||||| || || || || || ||||| Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| || ||||| ||||| Sbjct 789393 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAA 789452 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || ||||| ||||||||||| || |||| ||| || || | ||||| ||| Sbjct 789453 CAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 789512 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| ||||| |||||||| Sbjct 789513 ATCCAGAAGGAGTCCACACTTCATCT 789538 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| ||||| || || ||||| ||||| || ||||| ||||| Sbjct 790115 ATGCAAATTTTCGTCAAAACGCTCACTGGGAAGACGATTACCCTCGAGGTCGAGTCGTCC 790174 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||||| || || ||||||||||| || || || || |||||| Sbjct 790175 GATACGATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 790234 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||||||||| || ||||| | || || || | ||||| || Sbjct 790235 CAGCGCTTGATCTTCGCTGGTAAGCAGCTTGAGGACGGGCGGACGCTCTCGGACTACAAC 790294 Query 27586 GTCCAAAAGGA 27596 | || ||||| Sbjct 790295 ATTCAGAAGGA 790305 >seq1 Length=2076502 Score = 105 bits (116), Expect = 8e-18 Identities = 351/545 (64%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 64351 TTCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACC---TA 64407 |||||||| | ||||| | || ||| | |||||||| ||||||| | |||| | Sbjct 1597145 TTCTGGACAGCGGAGGAAATGGACCTCTCGAAGGATCTTCACGACTGGAACAACCGCCTT 1597086 Query 64408 AACTCACAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGA 64467 ||| | || | ||||||||| ||||| || ||||| || | || || Sbjct 1597085 AACGACAACGAGCGCCACTTCATCTCTCACGTCCTCGCCTTCTTTGCTGCCTCCGATGGG 1597026 Query 64468 ATTGTGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGG 64527 || || |||||||||| | | ||| | || || |||||| || | ||||| ||| Sbjct 1597025 ATAGTCAATGAGAATTTGCTCGAACGCTTTTCCAACGAAGTTCAGGTCGCCGAGGCTCGG 1596966 Query 64528 TCATTCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATG 64587 | ||||||| || ||| | | |||| || || |||||||||||| ||| | Sbjct 1596965 TGTTTCTATGGGTTCCAGATTATGATGGAAAACATCCACTCCGAGACGTATTCCCTCCTC 1596906 Query 64588 ATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACT 64647 || |||| | | |||| ||| |||| ||| |||||| || | ||||| Sbjct 1596905 ATCGACACTTACATCAAGGATGCTGCCGAGCGGGAGTATCTGTTCGATGCCGTTGAGACC 1596846 Query 64648 GTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGTGGGTCG 64704 | || | | || ||||| |||||||| || ||||||| | || ||| Sbjct 1596845 ATCCCTTGCATCAAGAAGAAGGCGGAATGGGCTCTCAGGTGGATTGCTGACCGACACTCG 1596786 Query 64705 TCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA 64764 | || | | ||||||| || |||||| ||| ||||| || ||||| || || ||| Sbjct 1596785 ACTTTCGCCGAACGTCTCGTTGCCTTTGCCGCTGTTGAAGGTATCTTCTTCTCAGGATCA 1596726 Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAAC 64824 || || || |||||| | || || || || || ||||| || | | || || || Sbjct 1596725 TTTGCCTCCATCTTCTGGATGAAGAAACGCGGTCTCATGCCTGGCTTAACCTTCTCCAAT 1596666 Query 64825 GAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCAC 64884 ||||| || || || ||||| | || || ||||| |||||||||||| Sbjct 1596665 GAGCTCATTAGCCGTGATGAGGGCATGCATACCGATTTTGCATGCCTCCTGTTCAGCCAT 1596606 Query 64885 CTCAA 64889 ||||| Sbjct 1596605 CTCAA 1596601 >seq29 Length=592567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/119 (79%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| ||||| ||||| | |||||| |||| |||||||| | Sbjct 574935 ATGCAAATCTTTGTTAAGACCCTTACTGGCAAAATGATTACT-TTGAAGTTGAGTCTTCT 574877 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGG-AGGGAATTCCTCCAGACC 27523 || | ||||| || ||||||| || ||||||||||||| |||| || |||| ||| Sbjct 574876 GACACCATTGACAACATGAAGGCGAAGATTCAGGACAAGGAAGGGTATGGGTCCATACC 574818 >seq8 Length=1449076 Score = 93.3 bits (102), Expect = 5e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 |||| ||||| ||||||||||| || || || ||||| ||||| |||||||||| || | Sbjct 782602 GAATCCCTCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCA 782543 Query 27569 CCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 |||| ||| ||||| || | |||||||| ||||| || || | ||| | ||||| || Sbjct 782542 CCCTCAGC-GACTACAACATTCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGT 782484 Query 27628 GGTGG 27632 || || Sbjct 782483 GGCGG 782479 >seq33 Length=576204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| |||||| ||||||| || | | | || |||||||| | Sbjct 118947 ATGCAAATCTTCGTGAAGACCCTTACCAGCAAGACGATAAATTTCGAAGTTGAGTCCTCT 118888 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| ||||||| || |||||||||||||| || Sbjct 118887 GACACTATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGG 118844 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| ||||||||||||| || | | | || |||||||| Sbjct 136105 ATGCAAATCTTTGTGAAGACCCTTACCGGCAAGATGATCAATTTGGAAGTTGAGTCTTCC 136046 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||||| || ||||||||||| || || Sbjct 136045 GACACCATCGACAATGTGAAGGCGAAGATTCAGGACAAAGAAGG 136002 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 |||||||| |||| || || ||||| ||||| || ||||||| || || || | ||| Sbjct 119061 GACCAGCAATGTCTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCTGAC 119002 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||| |||||||||||||| || || || || |||| ||||||| Sbjct 119001 TACAACATCCAGAAGGAATCCACTCTCCAACTCATCCTGGGTCTGTGCGGTGG 118949 >seq3 Length=1723946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| |||||| ||||||| || | | | || |||||||| Sbjct 236545 ATGCAAATCTTTGTGAAGACCCTTACCAGCAAGACAATAAATTTCGAAGTTGAGTCCTCC 236486 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || ||||||| || |||||||||||||| || Sbjct 236485 GACACCATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAAGG 236442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308218562720