Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18 105 4e-18 >seq18 Length=860724 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||||||| |||||| ||||||||||| || || || || ||| | || ||||| || Sbjct 790041 ATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTG 789982 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || | |||||| ||||| ||||| | ||||| ||||| ||| | Sbjct 789981 CTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTC-CTGAATCT 789923 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||| || ||| | || ||||| ||| || || | ||| || || || || | Sbjct 789922 TTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCAG 789863 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | ||| ||||| ||||||||||| Sbjct 789862 TAAGCGTCTTCACGAAAATCTGCAT 789838 Score = 104 bits (114), Expect = 1e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 |||| || || ||||||||||| |||||||| || || || || || ||| |||| |||| Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 | || ||||| || || || || ||||| ||||| || || | || |||||||| || Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 34619 TCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || || | || ||| | ||| || || ||| || || | ||| ||||| || Sbjct 790202 TC-TTCGCCTTGACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTC 790144 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | |||||| || ||||| ||||| Sbjct 790143 CCAGTGAGCGTTTTGACGAAAATTTGCAT 790115 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || ||||| ||||| ||| ||||||| || || || ||||| || Sbjct 789801 CTCCTTCTGGATGTTGTAGTCTGAGAGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAA 789742 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||| |||||||| || || | ||||||||||| ||| || | || ||| Sbjct 789741 AATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGT 789683 Query 34635 T-AAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691 | || ||||| || | ||| ||||| | ||| || || || || || | || || Sbjct 789682 TGTCGATGGTGTC--CGATGACTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTT 789625 Query 34692 CACAAAAATCTGCAT 34706 || || |||||||| Sbjct 789624 GACGAAGATCTGCAT 789610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728426255298