Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq18 100 2e-16 >seq5 Length=1591901 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||||||||||| || ||||| ||||| | | ||| ||| |||| || ||||| Sbjct 947544 ATGAAGGGTGCTCTCTTTCTGGATATTGTAATCTGACAATGTACGTCCGTCTTCTAGCTG 947603 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| ||||| || ||||| |||| || | | ||||| ||| ||| || Sbjct 947604 CTTTCCAGCAAAAATAAGGCGTTGCTGATCGGGAGGAATCCCTTCTTTATCCTGGATCTT 947663 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | ||| | ||| | | | || ||| ||||| || |||| |||||| | || |||| Sbjct 947664 CGCTTTCA-CGTTGTCAATAGTGTCGGATGACTCGACCTCCAACGTGATGGTCTTGCCCG 947722 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||| || |||||||| ||||| Sbjct 947723 TCAACGTCTTGACAAAGATCTGCAT 947747 >seq18 Length=860724 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 |||| || || |||||||| || || || || || || | || || || |||| |||| Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 |||| || || || || || | ||||||||||| | ||| | || || |||||| || Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 39197 TTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 | ||| |||| ||| | | | ||||||| |||||| || || | || || | || Sbjct 790202 TCTTCGCCTTGA-CGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTC 790144 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||||||| || || |||||||| Sbjct 790143 CCAGTGAGCGTTTTGACGAAAATTTGCAT 790115 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || ||||| || | || || || | || |||||||| Sbjct 790041 ATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGCTG 789982 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || |||||||||||||||| || | || |||||||||| ||| | | Sbjct 789981 CTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCC-TGAATCT 789923 Query 39201 CTG-TTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 || |||| ||| | | | || || |||||| || || | || ||| | || || Sbjct 789922 TTGCCTTGA-CGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCA 789864 Query 39259 GTCAGCGTTTTAACAAAGATTTGCATC 39285 || ||||| || || || || |||||| Sbjct 789863 GTAAGCGTCTTCACGAAAATCTGCATC 789837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543998063378