Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq18 107 1e-18 seq5 107 1e-18 >seq18 Length=860724 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || ||||| ||||| || ||||| |||||||| || || || Sbjct 789333 ATGCAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCG 789392 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || || || ||| Sbjct 789393 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAA 789452 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| || || ||||||||||| | |||||| | ||| ||||| Sbjct 789453 CAACGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 789512 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||||||| | ||| Sbjct 789513 ATCCAGAAGGAGTCCACACTTCAT 789536 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || || || || || ||||| || || Sbjct 789838 ATGCAGATTTTCGTGAAGACGCTTACTGGGAAGACTATTACCCTTGAGGTTGAGTCGTCG 789897 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||| ||| |||||||| || | ||||| || || Sbjct 789898 GACACTATCGACAACGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCGCCCGACCAG 789957 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || || || || | |||||| || || || ||| Sbjct 789958 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTCTATCTGACTATAAC 790017 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 790018 ATTCAGAAGGAGTCCAC 790034 >seq5 Length=1591901 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || |||||||||||||| ||||| || | Sbjct 947975 ATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATCACTCTCGAGGTTGAGTCATCC 947916 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||||||||| | || || ||||| Sbjct 947915 GATACCATTGATAATGTCAAGGCGAAGA-TTCAGGACAAAGAAGGCATTCCCCCCGATCA 947857 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || ||||| || || || |||| || ||| | ||| || || Sbjct 947856 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCCGACTATAA 947797 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 947796 TATTCAGAAGGAGTCGAC 947779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008339435448