Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 196 7e-45 seq3 105 1e-17 >seq1 Length=2076502 Score = 196 bits (216), Expect = 7e-45 Identities = 386/567 (68%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| ||||| || || || ||||| |||||||| | || || | |||||| ||| Sbjct 1598855 AACAGCAAACACGCGAAGTCCGTGTGAAGCCCTTCATCCCGGCTGATGAGTTCGTTCGAA 1598796 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 |||||||| |||||||| | || ||||| || | ||| ||||| | ||||| ||||| Sbjct 1598795 AATGTGAGGCCAGGCATGAAACCGCGCTTCTTCATCCAGAATATTGAAGCGAACGATCCT 1598736 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 || || ||||| ||||| ||||| ||||| ||||||||||| || | | | | | Sbjct 1598735 GAGAAAAATATACCTTCCACAGCAGCGAAGGCGACAAGTCTTTCCGCAAACGTCGACTGC 1598676 Query 46801 TTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | |||||||| | |||||||| ||||| ||| | |||| |||||||| Sbjct 1598675 TTGTCTGCTATCCACCTGAGCGCCCAATCGGCCTTGCGCTTGATGGAAGGAATTGTTTCA 1598616 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 ||||| | ||| || | || || || |||| | | ||| ||||| || | | | Sbjct 1598615 ATAGCGTCAAACAGGAGAGTTCGCTCGTCCGGATCTCTGATATAGGTATCAATGAGCA-A 1598557 Query 46918 CTA-TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGC 46976 | | || | || || || | |||||| || | ||||| || || || || | || Sbjct 1598556 CGAGTAGGTCTCCGAGTGTACGTTTTCTATCATGGTTTGAAAACCATAGAAGCAACGCGC 1598497 Query 46977 TTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATC 47036 |||| | ||| ||||| | |||| |||||| | || || || || || ||||| Sbjct 1598496 CTCAGCCACCTGAACCTCGTTGGAAAACCGTTCAACGAGGTTTTCGTTAACGATGCCATC 1598437 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT-- 47094 | ||||| ||||| |||| ||||| || |||||| ||| | | | ||| Sbjct 1598436 AGAGGCAGCGAAAAAGGCCAGAACATGAGAGATGAAATATCGTTCGTTCGAGTTGAGTTT 1598377 Query 47095 -TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 || |||||||| ||| || | || | ||||| ||| || || ||||| || || || Sbjct 1598376 GTTGTTCCAGTCCATGAGGTCATGCGACAGATCTATTTCCTCTGCAGTCCAAAAAGATGC 1598317 Query 47154 CTCTGCTTTTTTATACATATTCCATAT 47180 || ||||| ||| |||| | |||||| Sbjct 1598316 CTGTGCTTGTTTGTACAGCTGCCATAT 1598290 Score = 145 bits (160), Expect = 1e-29 Identities = 417/640 (65%), Gaps = 6/640 (1%) Strand=Plus/Plus Query 46547 CTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGAT 46606 ||||||||||||||||||| || | || || | | | || || | || || Sbjct 1596539 CTTGTTCAATAGTGACAGCCTCAGTAATGATAGCCTTGATGGTATCGGGATGAGGGCGAC 1596598 Query 46607 GCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAA 46666 | | | ||| | |||| | ||||||||||| ||| | ||| ||||| | |||| Sbjct 1596599 GTTTGAGATGGCTGAACAGGAGGCATGCAAAATCGGTATGCATGCCCTCATCACGGCTAA 1596658 Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726 | | || || || || || | |||||||| || || || || || | ||| || || | Sbjct 1596659 TGAGCTCATTGGAGAAGGTTAAGCCAGGCATGAGACCGCGTTTCTTCATCCAGAAGATGG 1596718 Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 || || ||||| || ||||| || ||||| ||||| || || || || || | || Sbjct 1596719 AGGCAAATGATCCTGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACGAGACGTTCGG 1596778 Query 46787 CGTAACTGGCAT---CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACAC 46843 || || | | | | | ||||||||| ||||||| || ||||| ||||| | | Sbjct 1596779 CGAAAGTCGAGTGTCGGTCAGCAATCCACCTGAGAGCCCATTCCGCCTTCTTCTTGATGC 1596838 Query 46844 AAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATG 46903 |||| || || || | |||| || ||| | | || || ||| || | || | Sbjct 1596839 AAGGGATGGTCTCAACGGCATCGAACAGATACTCCCGCTCGGCAGCATCCTTGATGTAAG 1596898 Query 46904 TATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGT 46963 | || || | || |||| | || || || |||||||| || ||||| || || | Sbjct 1596899 TGTCGATGAGGAGGGAATACGTCTCGGAGTGGATGTTTTCCATCATAATCTGGAACCCAT 1596958 Query 46964 AAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCAT 47023 | ||||| | || || | | ||| || || | |||| ||||| ||||||||||| Sbjct 1596959 AGAAACACCGAGCCTCGGCGACCTGAACTTCGTTGGAAAAGCGTTCGAGCAAATTCTCAT 1597018 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT---ATTTTT 47080 | ||||| ||||| |||||||| || || | || || || || | | | Sbjct 1597019 TGACTATCCCATCGGAGGCAGCAAAGAAGGCGAGGACGTGAGAGATGAAGTGGCGCTCGT 1597078 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 ||| || | || |||||||| | | ||| || || | || | ||| || |||| Sbjct 1597079 TGTCGTTAAGGCGGTTGTTCCAGTCGTGAAGATCCTTCGAGAGGTCCATTTCCTCCGCTG 1597138 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||||||| || || || || || |||||||| | ||| || Sbjct 1597139 TCCAGAACGAAGCTTCAGCCTTCTTATACATCTGCCAGAT 1597178 >seq3 Length=1723946 Score = 105 bits (116), Expect = 1e-17 Identities = 180/260 (69%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 ||||| || ||||||||| |||| ||| | |||||| | ||||| |||||||| ||| Sbjct 703792 AGGCCAATGCCTCCTGCCGTTTTGCTGATCATAGCACAACTTTTCAGGGTGTCATAAATG 703733 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA---GCTAGACATTTGATGATGA 76990 || || ||| || ||| ||||| | || || || |||| | ||| | || Sbjct 703732 CCTTCGATAGAGTCCTCCTTCATGCAGACCAGGAAGCACGAGCTA---AGTTGTGGGTGG 703676 Query 76991 ACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGA 77050 || ||||| || || | ||||| || || || ||||| | ||| || | ||| Sbjct 703675 GGTGTACCTGCGTTGAAGAGGGTAGGCGACGCGTGCGTGAAATAACGTTCGGACATGAGA 703616 Query 77051 TTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATC 77110 ||||| ||||||||||| || || || | |||||| || || ||||||||||| Sbjct 703615 TTGTAAGTTTCAATAACGCGATCCATGTCGGAACCATGAATGCCAACGGCGACACGCATG 703556 Query 77111 AACATATGCTGAGGTCGTTC 77130 | |||||| || || ||||| Sbjct 703555 ATCATATGTTGGGGACGTTC 703536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931673025920