Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18 114 3e-20 seq5 86.0 1e-11 >seq18 Length=860724 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| || ||||||||||| || | | || | ||| ||| Sbjct 789821 AGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTCCGCCCGTCT 789762 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || || | || ||||| | | ||| || ||||| | Sbjct 789761 TCGAGCTGCTTT--CCGGCGAAAATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGT 789704 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || ||||| | || | | |||| || ||| ||||| || || || | Sbjct 789703 CCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGG 789644 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| ||||||| |||||| Sbjct 789643 TCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||| ||||| ||||| || || ||||| || || | || ||| | |||||| || || Sbjct 790043 AGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGC 789984 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || || ||||| || | ||||||||| | || || || || || || ||||| Sbjct 789983 TGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATC 789924 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||| ||||| | || | |||| || ||| || ||||| |||||||| || || Sbjct 789923 TTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCCA 789864 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||||||||| | |||||| Sbjct 789863 GTAAGCGTCTTCACGAAAATCTGCAT 789838 >seq5 Length=1591901 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||||||||| ||||| || || || || || |||| | ||| | || || Sbjct 947764 AGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAAAGAGTACGGCCGTCC 947823 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | || || || | | || ||||| || || Sbjct 947824 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGAATGCCTTCTTTGTCC 947883 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | | | || || ||| || || ||||| || || Sbjct 947884 TGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAACCTCGAGAGTGATCGTC 947943 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||||| |||||| Sbjct 947944 TTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816276301326