Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18 168 1e-36 seq5 131 4e-25 seq1 104 5e-17 >seq18 Length=860724 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || ||||| ||||| || ||||| || || |||||| Sbjct 789523 TCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGCTTACCCGCAAAG 789464 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| |||||||||||| || || ||||||||||| || ||||| || || ||| | Sbjct 789463 ATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 789404 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| |||||||| | ||||||||||| ||||| ||||| || || | ||||||||| Sbjct 789403 TCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACG 789344 Query 283089 AATATCTGCAT 283099 ||||| ||||| Sbjct 789343 AATATTTGCAT 789333 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | || || || |||||||||||||| | Sbjct 789836 CCACCACGAAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAG 789777 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || || || || ||||| || || | |||||||||||| || Sbjct 789776 AGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGG 789717 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| |||||||| | |||||| Sbjct 789716 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACT 789657 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 789656 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Score = 152 bits (168), Expect = 1e-31 Identities = 161/211 (76%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 282890 TACC-AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 |||| ||||| | ||| || || || ||||| ||||||| || ||||| ||||||| Sbjct 790048 TACCGAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCT 789989 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | || || || || |||||||||| ||| || ||||| |||||| ||||| ||||| | Sbjct 789988 CAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCT 789929 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 | |||||||| || ||| | |||||||||||||| | || || || || || || |||| Sbjct 789928 GAATCTTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCT 789869 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || | ||||| ||||| |||||||| Sbjct 789868 TCCCAGTAAGCGTCTTCACGAAAATCTGCAT 789838 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || || ||||||||||| | ||||| || || ||||| || || || || Sbjct 790311 GTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAAGCTGCTTACCA 790252 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 || |||||||| || || |||||| || || || |||||||| |||||||| || || Sbjct 790251 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 790192 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 ||| | || || || || || | ||||| ||||| || |||||||| || || | || Sbjct 790191 ACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCCAGTGAGCGTT 790132 Query 283083 TTAACGAATATCTGCAT 283099 || ||||| || ||||| Sbjct 790131 TTGACGAAAATTTGCAT 790115 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || ||||||||||||||||| || || ||| | ||||| ||||| || | || || || Sbjct 789155 CCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATTGTGTCAGAGGACTCAACCTCA 789096 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 789095 AGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 789052 >seq5 Length=1591901 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| ||||| || ||||| | || || || || || || ||||| | | Sbjct 947749 CCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGAA 947808 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || || ||||| | ||||||||| || ||| Sbjct 947809 AGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGGA 947868 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| || ||||| || || || |||| || || || || | || || Sbjct 947869 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAACC 947928 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||||||||| || || | || || ||||| |||||||| Sbjct 947929 TCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCAT 947975 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/108 (80%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 282994 TACCCTCCTT-GTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| ||| |||||| ||||| || || || ||||||| || ||||| | || || Sbjct 948151 TACCCTTCTTTGTCTTGAATCTTGGCCTTGACATTATCGATGGTATCCGAGGACTCAACC 948210 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| || || | |||||||||||| ||||||||| Sbjct 948211 TCGAGCGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATT 948258 >seq1 Length=2076502 Score = 104 bits (114), Expect = 5e-17 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || || |||||||||||||| | ||| | || ||||| || ||||| || || ||| | Sbjct 1596452 CTCATTGGCATGAATGCTGACTTGATGTGCCAGTATATTGAGTTCGTTGCCGACCGTCTC 1596393 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || || || ||| | ||||| || || ||| | || || |||| || ||||| Sbjct 1596392 CTAGTCGCACTGGGGAATGAGAAGGTCTACAACAAAACAAATCCGTTCGACTTCATGGAC 1596333 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGC--GTGTCAG 230389 | || || ||||||||||| |||||||||||||| |||| ||||||| Sbjct 1596332 ATGATCTCTCTCCAGGGGAAGACTAACTTCTTCGAGAAGCGGGTGTCAG 1596284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735096128124