Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18 132 3e-26 seq15 89.7 4e-13 >seq18 Length=860724 Score = 132 bits (146), Expect = 3e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 ||| ||| || ||||||||||| || |||||||| || | ||| ||| |||| || | Sbjct 790322 CCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAA 790263 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 ||||||| || || |||||||| |||||||| || | || | |||||||| ||| | Sbjct 790262 GCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 790203 Query 44250 TCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 ||||| ||| | | | || || |||| || || ||||| | ||||||||||| | Sbjct 790202 TCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCC 790143 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || || ||||| |||||||| Sbjct 790142 CAGTGAGCGTTTTGACGAAAATTTGCAT 790115 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| || | |||| ||| |||| || Sbjct 789818 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTCCGCCCGTCTTCG 789759 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | ||| || || || | || | || ||||| ||| Sbjct 789758 AGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGA 789699 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || || || | || || ||||| Sbjct 789698 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACTTCGAGGGTGATGGTCTTG 789639 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||| ||||| Sbjct 789638 CCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 || || || ||| |||||| || ||||| || || | || |||| | || || ||| Sbjct 790043 AGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGC 789984 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || |||||||||| ||||||||| || | || | || || || ||| ||| Sbjct 789983 TGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCCTGAATC 789924 Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || ||| | | ||| | || ||||| | || || ||||| | ||||| ||||| || Sbjct 789923 TT-TGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCC 789865 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| || ||||| Sbjct 789864 AGTAAGCGTCTTCACGAAAATCTGCAT 789838 >seq15 Length=1191322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/110 (80%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 44230 CACACC-TTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 |||||| |||||| ||| || || |||| || ||| | |||||||| | || ||| Sbjct 976169 CACACCCTTCCTTATCCTGAATTTTG-GCTTTAACGTTGTCGATGGTGTCCGACGACTCC 976111 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||||||||| |||||||||||||| |||||||||||||| Sbjct 976110 ACCTCGAGGGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATTTGCAT 976061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989057460802