Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18 161 2e-34 seq5 141 2e-28 seq15 87.8 4e-12 >seq18 Length=860724 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||||||||| || || || ||| Sbjct 789613 CAGATCTTCGTCAAGACACTCACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGAC 789672 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 789673 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAACAA 789732 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| ||||||||||| || |||| || | || || ||| || Sbjct 789733 CGTCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGGCGGACACTCTCAGACTACAACATC 789792 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| || || |||||| Sbjct 789793 CAGAAGGAGTCAACCCTTCACCTTGTT 789819 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||||||||| || || || ||| Sbjct 789336 CAAATATTCGTTAAGACACTCACTGGAAAGACCATCACCCTCGAAGTCGAGTCGTCGGAC 789395 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || |||||||| ||||| ||| Sbjct 789396 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAACAA 789455 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || || |||||||| | ||||| |||| || || || Sbjct 789456 CGCCTGATCTTTGCGGGTAAGCAACTGGAAGATGGTCGCACTCTCTCCGACTACAATATC 789515 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || ||||| ||||| Sbjct 789516 CAGAAGGAGTCCACACTTCATCT 789538 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || || ||||| ||||| || || ||| Sbjct 789841 CAGATTTTCGTGAAGACGCTTACTGGGAAGACTATTACCCTTGAGGTTGAGTCGTCGGAC 789900 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||||||| || || || || |||||||| Sbjct 789901 ACTATCGACAACGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCGCCCGACCAGCAG 789960 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | ||||| | || |||||| | Sbjct 789961 CGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACTCTATCTGACTATAACATT 790020 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || ||||| Sbjct 790021 CAGAAGGAGTCCACTCTCCATCT 790043 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| || || ||||| ||||||||||| || || || Sbjct 790118 CAAATTTTCGTCAAAACGCTCACTGGGAAGACGATTACCCTCGAGGTCGAGTCGTCCGAT 790177 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| |||||||| ||||| ||||| || |||||||| Sbjct 790178 ACGATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 790237 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| || || || |||| || | || || ||| | Sbjct 790238 CGCTTGATCTTCGCTGGTAAGCAGCTTGAGGACGGGCGGACGCTCTCGGACTACAACATT 790297 Query 178104 CAAAAAGA 178111 || || || Sbjct 790298 CAGAAGGA 790305 >seq5 Length=1591901 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || |||||||| |||||||| || || || Sbjct 947972 CAGATCTTCGTCAAAACCCTTACTGGGAAGACGATCACTCTCGAGGTTGAGTCATCCGAT 947913 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||||||||| || || || || || ||| Sbjct 947912 ACCATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGATCAACAA 947853 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | |||||| |||| ||||| | Sbjct 947852 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCCGACTATAATATT 947793 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 947792 CAGAAGGAGTCGACTCTTCATCTCGT 947767 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||||||||| ||||||||||| ||||||||||| || || |||||||| || || | | Sbjct 948100 GAATCCCTCCTGACCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCA 948041 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | ||| | ||||| ||| | || ||||| || || || ||||| ||| Sbjct 948040 CACTTTCTGATTACAACATTCAGAAAGAGTCTACCCTCCATCTCGTT 947994 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| ||||| || ||||| |||||||| || ||| || Sbjct 948254 CAGATCTTCGTTAAGACTCTCACCGGAAAGACCATCACGCTCGAGGTTGAGTCCTCGGAT 948195 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| |||||||| ||||||||||| Sbjct 948194 ACCATCGATAATGTCAAGGCCAAGATTCAAGACAAAGAAGG 948154 >seq15 Length=1191322 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || ||||| |||||||||||||| || ||| Sbjct 976064 CAAATCTTCGTCAAGACCCTCACGGGGAAGACGATTACCCTCGAGGTGGAGTCGTCGGAC 976123 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| ||||| ||| || |||||||| || ||||| Sbjct 976124 ACCATCGACAACGTTAAAGCCAAAATTCAGGATAAGGAAGG 976164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726480621364