Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyophyllum_20shimeji_20[genbank_20GCA_5F001950515.1_202016-12-09] 306 sequences; 52,434,773 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18 154 1e-32 seq5 129 5e-25 seq8 105 6e-18 seq15 82.4 7e-11 >seq18 Length=860724 Score = 154 bits (170), Expect = 1e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || ||| ||||||||||||||||||||| || || |||||| | || || ||| Sbjct 790043 AGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGATAGAGTGCGCCCATCCTCAAGC 789984 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| || || ||||| ||||| ||||| | |||| || ||| |||||| ||| | Sbjct 789983 TGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCTTTGTCC-TGAAT 789925 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 ||||| | ||| | | | |||||| |||||| ||||| | || || || || || Sbjct 789924 CTTTGCCTTGACGTTGTCGATAGTGTCCGACGACTCAACCTCAAGGGTAATAGTCTTCCC 789865 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| |||||||||||||| Sbjct 789864 AGTAAGCGTCTTCACGAAAATCTGCAT 789838 Score = 145 bits (160), Expect = 7e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 ||||| |||||||||||||||||||| ||||| ||||| || ||| |||| || |||||| Sbjct 790317 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTCCGCCCGTCCTCAAGCTGC 790258 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 || || ||||| |||| |||||| ||||| | ||| | || ||||||||| || | || Sbjct 790257 TTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC-TGGATCTT 790199 Query 41780 TGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 || | ||| | | | || ||| |||||| ||||| | || ||||| || || || Sbjct 790198 CGCCTTGACGTTGTCAATCGTATCGGACGACTCGACCTCGAGGGTAATCGTCTTCCCAGT 790139 Query 41839 CAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || |||||||| ||||| Sbjct 790138 GAGCGTTTTGACGAAAATTTGCAT 790115 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||| ||| Sbjct 789836 CCACCACGAAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGAG 789777 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| |||| ||||||||||| |||||||| || || || |||||||| | ||| Sbjct 789776 AGTGTCCGCCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGACGTTGTTGGTCGGGGGGG 789717 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | ||||| ||||| || Sbjct 789716 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGATGACTCGAC 789658 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || || || ||||| ||||| |||||||| Sbjct 789657 TTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 789610 Score = 114 bits (126), Expect = 1e-20 Identities = 155/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| ||||| || ||| ||||||||| || || ||||||||||| ||||| | || | Sbjct 789543 CACCGAGATGAAGTGTGGACTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTT 789484 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | || ||||| || || || |||||||| |||||||| | || | || |||||||||| Sbjct 789483 CCAGTTGCTTACCCGCAAAGATCAGGCGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCC- 789425 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | | ||||| |||||| || || | || || || Sbjct 789424 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACTTCGAGGGTGATGGTC 789365 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || ||||| Sbjct 789364 TTTCCAGTGAGTGTCTTAACGAATATTTGCAT 789333 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| | || | ||| || || ||||| |||||||||||| || || || || Sbjct 789331 CCACCGCGCAAGCGAAGCACGAGGTGAAGCGTAGACTCCTTCTGAATATTGTAATCAGAT 789272 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||||| |||| || ||||| ||||| ||||| ||||| || |||||||| Sbjct 789271 AGTGTGCGTCCGTCTTCAAGCTGTTTGCCAGCGAAGATCAGTCGTTGTTGGTC 789219 >seq5 Length=1591901 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || ||||| || || |||||||||||| ||||||||||| Sbjct 947748 GCCTCCGCGCAGACGAAGGACGAGATGAAGAGTCGACTCCTTCTGAATATTATAGTCGGA 947807 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| |||||||||||||| ||||| || || || ||||| || | ||| Sbjct 947808 AAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGATCGGGGGG 947867 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || || |||||| ||| | || || | || | | || ||| ||||| | Sbjct 947868 AATGCCTTCTTTGTCC-TGAATCTTCGCCTTGACATTATCAATGGTATCGGATGACTCAA 947926 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || || || || || ||||| ||||||||| Sbjct 947927 CCTCGAGAGTGATCGTCTTCCCAGTAAGGGTTTTGACGAAGATCTGCATG 947976 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || ||||| || || ||| ||||||||||| || || || Sbjct 947976 GCCTCCGCGCAGACGAAGAACGAGATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 948035 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||||| |||| |||||||||||||| ||||| || || || || ||||| Sbjct 948036 AAGTGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTC 948089 >seq8 Length=1449076 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| || || ||| |||||| |||||||| |||||| | Sbjct 782479 CCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGCTG 782538 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| | || |||||||||||||| ||||| ||||||||||| ||||| Sbjct 782539 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 782591 >seq15 Length=1191322 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || ||||| ||||||||| ||||| |||||| || ||||| | || ||| Sbjct 976322 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTTAGAGTGCGTCCATCCTCG 976263 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAA 41756 |||||||| || ||||| |||||||| || ||||| | ||||| Sbjct 976262 AGCTGCTTTCCAGCGAAGATCAGGCGTTGCTGGTCAGGGGGAA 976220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302231687200